Structure of PDB 7oyx Chain B Binding Site BS07

Receptor Information
>7oyx Chain B (length=347) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QKTLHIYNWTDYIAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTG
FDLVVPSASYLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNK
FAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVS
FLDDPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQ
YINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAWFD
VFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAE
VRENPGIYPPADVRAKLFTQKVQDPKIDRVRTRAWTKVKSGKLEHHH
Ligand information
Ligand IDONT
InChIInChI=1S/C6H15NO2/c1-6(7)5-9-4-3-8-2/h6H,3-5,7H2,1-2H3/t6-/m0/s1
InChIKeyCMXIILNXYHCYPP-LURJTMIESA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C[C@@H](COCCOC)N
OpenEye OEToolkits 2.0.7CC(COCCOC)N
CACTVS 3.385COCCOC[CH](C)N
CACTVS 3.385COCCOC[C@H](C)N
FormulaC6 H15 N O2
Name(2~{S})-1-(2-methoxyethoxy)propan-2-amine;
Jeffamine
ChEMBL
DrugBank
ZINCZINC000019395126
PDB chain7oyx Chain B Residue 407 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7oyx Fine-tuning spermidine binding modes in the putrescine binding protein PotF.
Resolution1.37 Å
Binding residue
(original residue number in PDB)		A95 G96
Binding residue
(residue number reindexed from 1)		A67 G68
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0019808 polyamine binding
GO:0019810 putrescine binding
Biological Process
GO:0015846 polyamine transport
GO:0015847 putrescine transport
Cellular Component
GO:0016020 membrane
GO:0030288 outer membrane-bounded periplasmic space
GO:0042597 periplasmic space
GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7oyx, PDBe:7oyx, PDBj:7oyx
PDBsum7oyx
PubMed34801550
UniProtP31133|POTF_ECOLI Putrescine-binding periplasmic protein PotF (Gene Name=potF)

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