Structure of PDB 2y2x Chain B Binding Site BS07
Receptor Information
>2y2x Chain B (length=378) Species:
208964
(Pseudomonas aeruginosa PAO1) [
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GFLEDAKTDLVLRNYYFNRDFRDLVDEWAQGFILKFSSGYTPGTVGVGLD
AIGLFGVKLNSGTSNELLPLHDDGRAADNYGRVGVAAKLRVSASELKIGE
MLPDIPLLRYDDGRLLPQTFRGFAVVSRELPGLALQAGRFDAVSLRNSAD
MQDLSAWSAPTQKSDGFNYAGAEYRFNRERTQLGLWHGQLEDVYRQSYAN
LLHKQRVGDWTLGANLGLFVDRDDGAARAGEIDSHTVYGLFSAGIGLHTF
YLGLQKVGGDSGWQSVYGSSGRSMGNDMFNGNFTNADERSWQVRYDYDFV
GLGWPGLIGMVRYGHGSNATTKAGSGGKEWERDVELGYTVQSGPLARLNV
RLNHASNRRSFNSDFDQTRLVVSYPLSW
Ligand information
Ligand ID
VNL
InChI
InChI=1S/C8H8O4/c1-12-7-4-5(8(10)11)2-3-6(7)9/h2-4,9H,1H3,(H,10,11)/p-1
InChIKey
WKOLLVMJNQIZCI-UHFFFAOYSA-M
SMILES
Software
SMILES
ACDLabs 12.01
[O-]C(=O)c1cc(OC)c(O)cc1
OpenEye OEToolkits 1.7.0
COc1cc(ccc1O)C(=O)[O-]
CACTVS 3.370
COc1cc(ccc1O)C([O-])=O
Formula
C8 H7 O4
Name
4-HYDROXY-3-METHOXYBENZOATE;
vanillate
ChEMBL
DrugBank
DB02130
ZINC
PDB chain
2y2x Chain B Residue 1409 [
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Receptor-Ligand Complex Structure
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PDB
2y2x
Pseudomonas Aeruginosa Opdk with Vanillate
Resolution
1.65 Å
Binding residue
(original residue number in PDB)
K44 F45 D59 A60 I61 M113
Binding residue
(residue number reindexed from 1)
K35 F36 D50 A51 I52 M101
Annotation score
1
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0015288
porin activity
Biological Process
GO:0055085
transmembrane transport
Cellular Component
GO:0016020
membrane
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Molecular Function
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Cellular Component
External links
PDB
RCSB:2y2x
,
PDBe:2y2x
,
PDBj:2y2x
PDBsum
2y2x
PubMed
UniProt
Q9HUR5
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