Structure of PDB 8w31 Chain A Binding Site BS07

Receptor Information
>8w31 Chain A (length=235) Species: 10116 (Rattus norvegicus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SSFFVYCKGPCHKVQPGKLRVQCGTCRQATLTLAQGPSCWDDVLIPNRMS
GECQSPDCPGTRAEFFFKCGAHPTSDKDTSVALNLITNNSRSIPCIACTD
VRNPVLVFQCNHRHVICLDCFHLYCVTRLNDRQFVHDAQLGYSLPCVAGC
PNSLIKELHHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLP
EQGQRKVTCEGGNGLGCGFVFCRDCKEAYHEGECD
Ligand information
Ligand IDA1AE9
InChIInChI=1S/C31H30N4O2/c1-22(36)34-21-30-28(19-32-35(30)20-27(34)18-23-8-3-2-4-9-23)24-13-15-26(16-14-24)31(37)33-17-7-11-25-10-5-6-12-29(25)33/h2-6,8-10,12-16,19,27H,7,11,17-18,20-21H2,1H3/t27-/m0/s1
InChIKeyZYSMPORNWLASGT-MHZLTWQESA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC(=O)N1Cc2c(cnn2CC1Cc3ccccc3)c4ccc(cc4)C(=O)N5CCCc6c5cccc6
ACDLabs 12.01CC(=O)N1Cc2c(cnn2CC1Cc1ccccc1)c1ccc(cc1)C(=O)N1CCCc2ccccc21
OpenEye OEToolkits 2.0.7CC(=O)N1Cc2c(cnn2C[C@@H]1Cc3ccccc3)c4ccc(cc4)C(=O)N5CCCc6c5cccc6
CACTVS 3.385CC(=O)N1Cc2n(C[CH]1Cc3ccccc3)ncc2c4ccc(cc4)C(=O)N5CCCc6ccccc56
CACTVS 3.385CC(=O)N1Cc2n(C[C@@H]1Cc3ccccc3)ncc2c4ccc(cc4)C(=O)N5CCCc6ccccc56
FormulaC31 H30 N4 O2
Name(S)-1-(6-benzyl-3-(4-(1,2,3,4-tetrahydroquinoline-1-carbonyl)phenyl)-6,7-dihydropyrazolo[1,5-a]pyrazin-5(4H)-yl)ethan-1-one;
1-[(6S,8R)-6-benzyl-3-[4-(3,4-dihydroquinoline-1(2H)-carbonyl)phenyl]-6,7-dihydropyrazolo[1,5-a]pyrazin-5(4H)-yl]ethan-1-one
ChEMBL
DrugBank
ZINC
PDB chain8w31 Chain A Residue 407 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8w31 Activation of Parkin by a Molecular Glue
Resolution2.5 Å
Binding residue
(original residue number in PDB)
S144 F146 L162 L176 P180 S181 C182 F208
Binding residue
(residue number reindexed from 1)
S1 F3 L19 L33 P37 S38 C39 F65
Annotation score1
External links
PDB RCSB:8w31, PDBe:8w31, PDBj:8w31
PDBsum8w31
PubMed
UniProtQ9JK66|PRKN_RAT E3 ubiquitin-protein ligase parkin (Gene Name=Prkn)

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