Structure of PDB 7bkd Chain A Binding Site BS07

Receptor Information
>7bkd Chain A (length=664) Species: 323259 (Methanospirillum hungatei JF-1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TEPRIGVFVCHCGTNIAGSMSIDDVVNYAKTLPYVAVADQYQYMCSTPGQ
KKIDDAIKEYNLTGVVVAACSPRLHEPTFRTATKEGGLNPFRFEMANIRE
QNSWVHMHGMWDEATQKAKDQVRMAVAKAAKLEDLVPKSVPVEKTAMVVG
GGVAGMQAALDLASAGIKTYLIERTPTIGGRMSQLDKTFPTLDCSQCILT
PKMVDVGRHPNIEMMTYTEVEKVEGYIGNFDVTLRKKARGVLTPTEATAK
GIVGGGCNGCGDCSAVCPVIKPNPFEMGMAPRKAIYIYHAQVMPLIYTVD
FDSCVKCGLCVEACGDKKAIDLEMQDEFITVKVGTAVLATGYELFPIENK
REWGYKQFDNVINALEFERLICASGPTGGHLVRPSDGKTPMKVGFVLCAG
SRDNTGIGKPYCSRFCCMYSLKHAHQIMEKIPGAVAYLFYMDIRSFGKMY
EEFYYRIQHEGAKFIRGRVANVLEDKETKNLHVFTEDTLLGRPVDVEVDL
LVLAAAVQPNEGANELRKKFGVSASQDGWMLEAHPKLNPCGTTTAGVFLA
GVCQGPKDIPDTVAQAEGAASAASIPIHMGEVELEPYFAMCIDELCAGCG
MCVNLCPYSALSLGEKNGRTVMVVTEAKCKGCGTCGGFCPGGAIKMQHFT
TPQIVAQIDAFFAG
Ligand information
Ligand IDSF4
InChIInChI=1S/4Fe.4S
InChIKeyLJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
CACTVS 3.385S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
FormulaFe4 S4
NameIRON/SULFUR CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain7bkd Chain A Residue 707 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7bkd Three-megadalton complex of methanogenic electron-bifurcating and CO 2 -fixing enzymes.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		C271 P272 A288 I289 C308 V309 K310 C311 G312 C314
Binding residue
(residue number reindexed from 1)		C267 P268 A284 I285 C304 V305 K306 C307 G308 C310
Annotation score4
Enzymatic activity
Enzyme Commision number 1.8.-.-
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding

View graph for
Molecular Function
External links
PDB RCSB:7bkd, PDBe:7bkd, PDBj:7bkd
PDBsum7bkd
PubMed34516836
UniProtQ2FKZ1

[Back to BioLiP]