Structure of PDB 6vt2 Chain A Binding Site BS07

Receptor Information

>6vt2 Chain A (length=409) Species: 888807 (Streptococcus sanguinis SK1 = NCTC 7863) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

TDTTPPTITLPQEVIAYRGEEFEFFVETTDDSGRVNRVIVRNIEGADNST
YLDPNWIRYSTDNLSVPGNATPANPLRTRVYGIVPINHGVGPGDRYTKYV
RAEDAAGNITALVDKQSERFVLVIRPQTEKYTPQVPTLTYVQNANSLTQT
DKDAVIAAVKSANPNLPATSTYSVSENGTVTITYPDGSTDTIAAAQTVDT
DRVAPVFVDEGRDYIFYRGEEGTAELHFYDNSGKITNVNFAGDLAASSTY
NTLLGLGFTFNTPNINNPNNATEQNPLVTTIRGTIPKSLPAGPGGKYTFK
VRATDASGLTSEAKIFRIVFANQTDKYTPNNPGSLTGVLNPQQLSTSEKT
AIEEKVRAANTGNLPNNVQYVVNNDGSVTVIYPDDTPASRSRDTITADRT
VQDLRPRNS

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

6vt2 Chain A Residue 704 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6vt2 Tandem sialoglycan-binding modules in a Streptococcus sanguinis serine-rich repeat adhesin create target dependent avidity effects.
Resolution	1.52 Å
Binding residue (original residue number in PDB)	D452 V454 D481 N482 D556
Binding residue (residue number reindexed from 1)	D201 V203 D230 N231 D305
Annotation score	4

External links

PDB	RCSB:6vt2, PDBe:6vt2, PDBj:6vt2
PDBsum	6vt2
PubMed	32820052

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