Structure of PDB 2vb1 Chain A Binding Site BS07
Receptor Information
>2vb1 Chain A (length=129) Species:
9031
(Gallus gallus) [
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KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGS
TDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVS
DGNGMNAWVAWRNRCKGTDVQAWIRGCRL
Ligand information
Ligand ID
NO3
InChI
InChI=1S/NO3/c2-1(3)4/q-1
InChIKey
NHNBFGGVMKEFGY-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 10.04
CACTVS 3.341
[O-][N+]([O-])=O
OpenEye OEToolkits 1.5.0
[N+](=O)([O-])[O-]
Formula
N O3
Name
NITRATE ION
ChEMBL
CHEMBL186200
DrugBank
DB14049
ZINC
PDB chain
2vb1 Chain A Residue 406 [
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Receptor-Ligand Complex Structure
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PDB
2vb1
Triclinic Lysozyme at 0.65 A Resolution.
Resolution
0.65 Å
Binding residue
(original residue number in PDB)
Y23 N106 W111
Binding residue
(residue number reindexed from 1)
Y23 N106 W111
Annotation score
3
Enzymatic activity
Catalytic site (original residue number in PDB)
E35 N46 D48 S50 D52 N59
Catalytic site (residue number reindexed from 1)
E35 N46 D48 S50 D52 N59
Enzyme Commision number
3.2.1.17
: lysozyme.
Gene Ontology
Molecular Function
GO:0003796
lysozyme activity
GO:0005515
protein binding
GO:0016231
beta-N-acetylglucosaminidase activity
GO:0016798
hydrolase activity, acting on glycosyl bonds
GO:0042802
identical protein binding
Biological Process
GO:0016998
cell wall macromolecule catabolic process
GO:0031640
killing of cells of another organism
GO:0042742
defense response to bacterium
GO:0050829
defense response to Gram-negative bacterium
GO:0050830
defense response to Gram-positive bacterium
Cellular Component
GO:0005576
extracellular region
GO:0005615
extracellular space
GO:0005737
cytoplasm
GO:0005783
endoplasmic reticulum
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:2vb1
,
PDBe:2vb1
,
PDBj:2vb1
PDBsum
2vb1
PubMed
18084073
UniProt
P00698
|LYSC_CHICK Lysozyme C (Gene Name=LYZ)
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