Structure of PDB 7y5e Chain zK Binding Site BS06

Receptor Information
>7y5e Chain zK (length=463) Species: 35688 (Porphyridium purpureum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LSSGSSAAVPFSTAVRFESPSGGLDRYSRVDPAAPGPNVITRFLFKDRPV
RRSDPSLSEVDREATMRTVYRNVMGNAYVMEEERAELATLESQFLVGAIS
TRDFVRGVAKSATYKKRFFESVSQFRFIELNFKHFMGRAPLDMAEMSKHY
EIFAAGGYDAEVDSYFDSEEYLDVFGLDTVPYMRFRGTYAPNSTFNLQCR
LQGGWARSDKKLPMMSMLPLNNKAAIMPHQIVDGLPVIPNSEHPSQKYNV
PKVSREKLQRELLIAQGKANALQIELDAAYTSLASSRAFLAPFAAMAADM
DIRPLYGKNPQVFAGQFLGVGAGQWGKTGADTVRGRSRRVAADIGVKEFQ
LERVKQLVVDLQRALALEDAEADAPATSLLQAYQAKVYVKPPVIAKKKGP
EPVNEDEITIGQGDKKIKVTVLRNLGDRTEKLREKPEKEEEEGPRTFKDL
YETAKPMKGFPGD
Ligand information
Ligand IDPEB
InChIInChI=1S/C33H40N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h8,14-15,19-20,26,34H,2,7,9-13H2,1,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b27-14-,29-15-/t19-,20-,26-/m1/s1
InChIKeyNKCBCVIFPXGHAV-WAVSMFBNSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CCC1C(C(=O)NC1=CC2=NC(=Cc3c(c(c([nH]3)CC4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)C(=C2C)CCC(=O)O)C
OpenEye OEToolkits 1.5.0CC[C@@H]\1[C@H](C(=O)N/C1=C\C2=N/C(=C\c3c(c(c([nH]3)C[C@@H]4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)/C(=C2C)CCC(=O)O)C
CACTVS 3.341CC[C@@H]1[C@@H](C)C(=O)N\C1=C/C2=N\C(=C/c3[nH]c(C[C@H]4NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)C(=C2C)CCC(O)=O
CACTVS 3.341CC[CH]1[CH](C)C(=O)NC1=CC2=NC(=Cc3[nH]c(C[CH]4NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)C(=C2C)CCC(O)=O
FormulaC33 H40 N4 O6
NamePHYCOERYTHROBILIN
ChEMBL
DrugBank
ZINCZINC000058633585
PDB chain7y5e Chain zK Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7y5e In situ structure of the red algal phycobilisome-PSII-PSI-LHC megacomplex.
Resolution3.3 Å
Binding residue
(original residue number in PDB)		R98 N103 A104 Y105 A233 S235 K237
Binding residue
(residue number reindexed from 1)		R71 N76 A77 Y78 A206 S208 K210
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009507 chloroplast
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane
GO:0030089 phycobilisome

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7y5e, PDBe:7y5e, PDBj:7y5e
PDBsum7y5e
PubMed36922595
UniProtA0A5J4YI31

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