Structure of PDB 6j40 Chain a Binding Site BS06

Receptor Information
>6j40 Chain a (length=334) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VSLWERFCAWITSTENRLYIGWFGCLMFPTLLTATSCFIIAFIAAPPVDI
DGIREPVAGSLLYGNNIISGAVVPSSNAIGMHFYPIWEAASIDEWLYNGG
PYQLIVLHFLLGVSAYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLV
YPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSL
FSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIF
QYASFNNSRALHFFLALWPVVGIWITSMGISTMAFNLNGFNFNQSVVDSQ
GRVINTWADILNRANLGIEVMHERNAHNFPLDLA
Ligand information
Ligand IDOEX
InChIInChI=1S/Ca.4Mn.5O
InChIKeySEXWDHMBWJEXOJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.370O12|[Ca]3O4|[Mn]1O5|[Mn]2[O]36[Mn]O[Mn@]456
CACTVS 3.370O12|[Ca]3O4|[Mn]1O5|[Mn]2[O]36[Mn]O[Mn]456
OpenEye OEToolkits 1.7.0O1[Mn]O23[Mn]14O5[Ca]2O6[Mn]5O4[Mn]36
OpenEye OEToolkits 1.7.0O1[Mn][O@]23[Mn@@]14[O@]5[Ca]2[O@@]6[Mn]5[O@]4[Mn]36
FormulaCa Mn4 O5
NameCA-MN4-O5 CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain6j40 Chain c Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6j40 Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.
Resolution3.8 Å
Binding residue
(original residue number in PDB)		S169 D170 E189 H332 E333 H337 D342 A344
Binding residue
(residue number reindexed from 1)		S159 D160 E179 H322 E323 H327 D332 A334
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 29 18:36:39 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6j40', asym_id = 'a', bs = 'BS06', title = 'Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6j40', asym_id='a', bs='BS06', title='Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0009055,0009772,0019684,0045156', uniprot = '', pdbid = '6j40', asym_id = 'a'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009055,0009772,0019684,0045156', uniprot='', pdbid='6j40', asym_id='a')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>