Structure of PDB 8jzf Chain J Binding Site BS06

Receptor Information

>8jzf Chain J (length=220) Species: 2949 (Symbiodinium)

REAPKVLAGTGGPLPESFWDPAGFTNNKTDEELLFYRAAELKHGRIAMAA
VVGWFTNASGFHYLGDLWLKKPASDNPIEAFNQLSLLGVFQMVFFIGCLE
WLTTVPCPPPKDAPWDVIGMSDVLEEDTDENPMAEYKKIQMQELNNSRLA
MVAIIGLIVQATTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

Ligand information

• Ligand ID: UIX
• InChI: InChI=1S/C42H58O5/c1-30(18-14-20-32(3)22-23-37-38(6,7)28-36(46-34(5)43)29-40(37,10)45)16-12-13-17-31(2)19-15-21-33(4)24-25-42-39(8,9)26-35(44)27-41(42,11)47-42/h12-22,24-25,35-36,44-45H,26-29H2,1-11H3/b13-12+,18-14+,19-15+,25-24+,30-16+,31-17+,32-20+,33-21+/t23-,35-,36-,40+,41+,42-/m0/s1
• InChIKey: PVNVIBOWBAPFOE-GYMZYDTCSA-N
• SMILES:
  OpenEye OEToolkits 2.0.7: CC(=CC=CC=C(C)C=CC=C(C)C=C=C1C(CC(CC1(C)O)OC(=O)C)(C)C)C=CC=C(C)C=CC23C(CC(CC2(O3)C)O)(C)C
  OpenEye OEToolkits 2.0.7: C/C(=C\C=C\C=C(/C)\C=C\C=C(/C)\C=C=C1[C@](C[C@H](CC1(C)C)OC(=O)C)(C)O)/C=C/C=C(\C)/C=C/[C@]23[C@](O2)(C[C@H](CC3(C)C)O)C
  CACTVS 3.385: CC(=O)O[CH]1CC(C)(C)[C](=[C]=[CH]C(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=C[C]23O[C]2(C)C[CH](O)CC3(C)C)[C](C)(O)C1
  CACTVS 3.385: CC(=O)O[C@H]1CC(C)(C)[C](=[C@@]=[CH]\C(C)=C\C=C\C(C)=C\C=C\C=C(C)\C=C\C=C(C)\C=C\[C@@]23O[C@]2(C)C[C@@H](O)CC3(C)C)[C@](C)(O)C1
• Formula: C42 H58 O5
• Name: [(1~{S},5~{R})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate;
  Dinoxanthin
• PDB chain: 8jzf Chain J Residue 305

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8jzf Structures and organizations of PSI-AcpPCI supercomplexes from red tidal and coral symbiotic photosynthetic dinoflagellates.
• Resolution: 2.7 Å
• Binding residue (original residue number in PDB): M120 V123 L221 A222 A225 L229
• Binding residue (residue number reindexed from 1): M48 V51 L149 A150 A153 L157
• Annotation score: 1

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Wed Nov 27 16:44:58 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8jzf', asym_id = 'J', bs = 'BS06', title = 'Structures and organizations of PSI-AcpPCI super...d coral symbiotic photosynthetic dinoflagellates.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8jzf', asym_id='J', bs='BS06', title='Structures and organizations of PSI-AcpPCI super...d coral symbiotic photosynthetic dinoflagellates.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0009765,0016020', uniprot = '', pdbid = '8jzf', asym_id = 'J'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009765,0016020', uniprot='', pdbid='8jzf', asym_id='J')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>