Structure of PDB 2cdp Chain D Binding Site BS06

Receptor Information
>2cdp Chain D (length=130) Species: 203122 (Saccharophagus degradans 2-40) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ASIAVEAENFNAVGGTFPVSVYTVNGNTAINYVNQGDYADYTIAVAQAGN
YTISYQAGSGVTGGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSV
YLSAGTHQVRLHGAGSNNWQWNLDKFTLSN
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain2cdp Chain D Residue 1140 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2cdp Family 6 Carbohydrate Binding Modules in Beta-Agarases Display Exquisite Selectivity for the Non- Reducing Termini of Agarose Chains.
Resolution1.59 Å
Binding residue
(original residue number in PDB)		P26 Y40 N42 D45
Binding residue
(residue number reindexed from 1)		P18 Y32 N34 D37
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding

View graph for
Molecular Function
External links
PDB RCSB:2cdp, PDBe:2cdp, PDBj:2cdp
PDBsum2cdp
PubMed16601125
UniProtQ6DN99

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