Structure of PDB 7o0w Chain C Binding Site BS06

Receptor Information

>7o0w Chain C (length=299) Species: 1379270 (Gemmatimonas phototrophica)

AATDTVQVGYRGTAMEQNYDHGDLKTKFAQVKLPQSPPPAGESPPGPLPW
KNVQVLNDISIAEFNRTMIAMSTWVAGTGNCAYCHNVAAFQDDTLPNGKP
LYTKIVARRMLQMTRNINGNYSQHVKNTGVTCYTCHMGKPLPNGLWFYSS
QTDYLRHYLDRDGARVITQGVAPSNANRSSTKQAEWTYALMISQSRSLGV
NCTYCHNTRQFASWREAPPARVTAYHGILMLRDVNQNYLAPLQPVYPAVR
LGAMGDAPKAQCVTCHNGAYKPLYGAQMAKDFPAMWGRADWNGVPFPGI

Ligand information

• Ligand ID: V75
• InChI: InChI=1S/C10H14O8/c1-4(11)17-6-3-16-9(10(14)15)7(13)8(6)18-5(2)12/h6-9,13H,3H2,1-2H3,(H,14,15)/t6-,7-,8+,9-/m0/s1
• InChIKey: PUWANSDFPUWGOX-MAUMQABQSA-N
• SMILES:
  CACTVS 3.385: CC(=O)O[C@H]1CO[C@@H]([C@@H](O)[C@@H]1OC(C)=O)C(O)=O
  OpenEye OEToolkits 2.0.7: CC(=O)OC1COC(C(C1OC(=O)C)O)C(=O)O
  OpenEye OEToolkits 2.0.7: CC(=O)O[C@H]1CO[C@@H]([C@H]([C@@H]1OC(=O)C)O)C(=O)O
  CACTVS 3.385: CC(=O)O[CH]1CO[CH]([CH](O)[CH]1OC(C)=O)C(O)=O
• Formula: C10 H14 O8
• Name: (2~{S},3~{S},4~{S},5~{S})-4,5-diacetyloxy-3-oxidanyl-oxane-2-carboxylic acid
• PDB chain: 7o0w Chain C Residue 1006

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7o0w 2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem.
• Resolution: 2.47 Å
• Binding residue (original residue number in PDB): P110 G112
• Binding residue (residue number reindexed from 1): P96 G98
• Annotation score: 1

Gene Ontology

Molecular Function

• GO:0005506 iron ion binding
• GO:0009055 electron transfer activity
• GO:0020037 heme binding
• GO:0046872 metal ion binding

Biological Process

• GO:0015979 photosynthesis
• GO:0019684 photosynthesis, light reaction

Cellular Component

• GO:0030077 plasma membrane light-harvesting complex

External links

• PDB: RCSB:7o0w, PDBe:7o0w, PDBj:7o0w
• PDBsum: 7o0w
• PubMed: 35171663
• UniProt: A0A143BHR6