Structure of PDB 8xri Chain B Binding Site BS06

Receptor Information

>8xri Chain B (length=772) Species: 10498 (African swine fever virus BA71V) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

VDVDKYTRARNAGGKRAQDCMLLAAEGDSALSLLRTGLTLGKSNPGPSFD
FCGMISLGGVIMNACKKVTNIIMVRNEQLTNNKVLQGIVQVLGLDFNCHY
KTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWPQLIIHGFVK
RLLTPLIRVYEKGKTMPVEFYYEQEFDAWAKKQTSLVNHTVKYYKGLAAH
DTHEVKSMFKHFDNMVYTFTLDDSAKELFHIYFGGESELRKRELCTGVVP
LTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAIERQIPNFLDGMTRARRK
ILAGGVKCFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQYYP
GSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQLASEFIKTMFPAEDSW
LLPYVFEDGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDILA
LVRAYVDKDNPKHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYYSY
GTYDISEQRNIITITELPLRVPTVAYIESIKKSSNRMTFIEEIIDYSSSE
TIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSHLNFVKPKG
GIIEFNSYYEILYAWLPYRRELYQKRLMREHAVLKLRIIMETAIVRYINE
SAELNLSHYEDEKEASRILSEHGFPPLNHTLIISPEFASIEELNQKALQG
CYTYILSLQARELLIAAKTRRVEKIKKMQARLDKVEQLLQESPFPGASVW
LEEIDAVEKAIIKGRNTQWKFH

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

8xri Chain B Residue 1202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8xri The crystal structure of AsfvTopII in complex with both G-DNA and T-DNA
Resolution	2.92 Å
Binding residue (original residue number in PDB)	E593 E827
Binding residue (residue number reindexed from 1)	E173 E407
Annotation score	4

External links

PDB	RCSB:8xri, PDBe:8xri, PDBj:8xri
PDBsum	8xri
PubMed
UniProt	Q00942\|TOP2_ASFB7 DNA topoisomerase 2 (Gene Name=TOP)

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