Structure of PDB 8xrf Chain B Binding Site BS06

Receptor Information

>8xrf Chain B (length=774) Species: 10498 (African swine fever virus BA71V) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

VDVDKYTRARNAGGKRAQDCMLLAAEGDSALSLLRTGLTLGKSNPSGPSF
DFCGMISLGGVIMNACKKVTNITIMVRNEQLTNNKVLQGIVQVLGLDFNC
HYKTQEERAKLRYGCIVACVDQDLDGCGKILGLLLAYFHLFWPQLIIHGF
VKRLLTPLIRVYEKGKTMPVEFYYEQEFDAWAKKQTSLVNHTVKYYKGLA
AHDTHEVKSMFKHFDNMVYTFTLDDSAKELFHIYFGGESELRKRELCTGV
VPLTETQTQSIHSVRRIPCSLHLQVDTKAYKLDAIERQIPNFLDGMTRAR
RKILAGGVKCFASNNRERKVFQFGGYVADHMFYHHGDMSLNTSIIKAAQY
YPGSSHLYPVFIGIGSFGSRHLGGKDAGSPRYISVQLASEFIKTMFPAED
SWLLPYVFEDGQRAEPEYYVPVLPLAIMEYGANPSEGWKYTTWARQLEDI
LALVRAYVDKDNPKHELLHYAIKHKITILPLRPSNYNFKGHLKRFGQYYY
SYGTYDISEQRNIITITELPLRVPTVAYIESIKKSSNRMTFIEEIIDYSS
SETIEILVKLKPNSLNRIVEEFKETEEQDSIENFLRLRNCLHSHLNFVKP
KGGIIEFNSYYEILYAWLPYRRELYQKRLMREHAVLKLRIIMETAIVRYI
NESAELNLSHYEDEKEASRILSEHGFPPLNHTLIISPEFASIEELNQKAL
QGCYTYILSLQARELLIAAKTRRVEKIKKMQARLDKVEQLLQESPFPGAS
VWLEEIDAVEKAIIKGRNTQWKFH

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

8xrf Chain B Residue 1202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8xrf The crystal structure of AsfvTopII in complex with G-DNA
Resolution	2.94 Å
Binding residue (original residue number in PDB)	D539 D541 K615
Binding residue (residue number reindexed from 1)	D121 D123 K197
Annotation score	4

External links

PDB	RCSB:8xrf, PDBe:8xrf, PDBj:8xrf
PDBsum	8xrf
PubMed
UniProt	Q00942\|TOP2_ASFB7 DNA topoisomerase 2 (Gene Name=TOP)

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