Structure of PDB 6tr4 Chain B Binding Site BS06

Receptor Information
>6tr4 Chain B (length=506) Species: 935582 (Mediterraneibacter gnavus E1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NWIGDENLTGNAEAPAKDDVVPDKNQFRYQKEELAAFCHFGPNTFNEIEW
GEHYGNQKPSEIFTLKNDFDAETLVKTLKDAGFKKLIVTAKHHDGFCIWD
SEHTEYDVKASGYKNKNGESDILAEISKACTDQNMDMGLYLSPWDIHEPS
YGYKDEHGNPTTPDKDAKDYNEFYNNQLEEILGNPKYGNDGHFVEVWMAG
AKGSGANAQEYDFKKWFKTIQDNEGKAAGYDADCMLFGAEAYTTVRWIGN
ELGIAGKDTWSKSKVDKDKNTINSNKQGNATVGFEDGDQWTVPEADARIT
SGWFWGTKKNTPKTMEELSDMYFNSVGHNATLLLNVPPNNQGTVDKAILD
RVTEFGNNIKATFKTNLAKAEGASVKVSEVRGGAKEYKPGNMIDDNDETY
WATSDGKKSGEILIDLGKETKFDVVSIEEAIQNGQRINNYKVEYRNGDSG
TWTLLEEGKTIGAKRLCRTSETTARQIKITVGTCDGKVPMISEIGVYKST
EDMEKP
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain6tr4 Chain B Residue 706 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6tr4 Fucosidases from the human gut symbiont Ruminococcus gnavus.
Resolution1.45 Å
Binding residue
(original residue number in PDB)		L188 G197 E230
Binding residue
(residue number reindexed from 1)		L182 G191 E224
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.187: (Ara-f)3-Hyp beta-L-arabinobiosidase.
Gene Ontology
Molecular Function
GO:0004560 alpha-L-fucosidase activity
Biological Process
GO:0005975 carbohydrate metabolic process

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6tr4, PDBe:6tr4, PDBj:6tr4
PDBsum6tr4
PubMed32333083
UniProtA0A6N3BKT0

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