Structure of PDB 8yfq Chain A Binding Site BS06

Receptor Information

>8yfq Chain A (length=1398) Species: 460519 (Komagataella phaffii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

SQFPYSSAPLRSVKEVQFGLLSPEEIRAISVVKIEYPEIMDESRQRPREG
GLNDPKLGSIDRNFKCQTCGEGMAECPGHFGHMELAKPVFHIGFIPKIKK
VCECICMNCGKLLLDETNPTMAQAIRIRDPKKRFNAVWQLCKTKMVCEAD
SRGGCGNTQPVVRKDGMKLWGTWKKQPERKLLTPGEILNVFKHISPEDCF
RLGFNEDYARPEWMIITVLPVPPPQVRPSIAMDETTQGQDDLTHKLSDIL
KANINVQKLEMDGSPQHIINEVEQLLQFHVATYMDNDIAGQPQALQKSGR
PVKAIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPISI
AKTLSYPETVTQYNIHRLTEYVRNGPNEHPGAKYVIRDNGDRIDLRYHKR
AGDIVLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRL
NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPV
MGIVQDTLCGVRKMTLRDTFIEYEQVMNMLFWVPSWDGVVPQPAILKPKP
LWTGKQLLSIAIPSGIHLQRTDGGNSLLSPKDNGMLIVDGKVMFGVVDKK
TVGSGGGGLIHTVMREKGPKICAELFGNIQKVVNYWLLHNGFSIGIGDAI
ADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVSR
TLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMV
EGKRIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAG
REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGE
DGLDGTQVERQTIDTIPGSDKAFHKRYYVDLMDEKNSIKPDVIEYAADIL
GDVELQKELNSEYEQLVSDRKFLREIVFVNGDHNWPLPVNLRRIIQNAQQ
IFHLDRAKASDLTIPEIIHGVRDLCKKLFVLRGENELIKEAQQNATSLFQ
CLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVHPGEMVGVIAA
QSIGEPATQMNVTLGVPRLKEILNVAKNIKTPALTVYLDREIALDIEKAK
VIQSSIEYTTLKNVTSATEIYYDPDPTSTVIEEDFDTVEAYFSPWLLRLE
LDRARMLDKQLTMNQVADKISEVFSDDLFVMWSEDNADKLIIRCRVIRDE
EDQMLKRIEAHMLDLIALRGIPGISKVYMVKHKVSVPDESGEYKNEELWA
LETDGINLAEVMAVPGVDSSRTYSNSFVEILSVLGIEATRSSLYKEILNV
IAFDGSYVNYRHMALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEET
VEILFEAGAAAELDDCRGVSENVMLGQLAPMGTGAFDVMIDEKLLTSL

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

8yfq Chain A Residue 1803 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8yfq Structural basis of eukaryotic transcription termination by the Rat1 exonuclease complex.
Resolution	3.3 Å
Binding residue (original residue number in PDB)	D482 D484 D486
Binding residue (residue number reindexed from 1)	D461 D463 D465
Annotation score	1

External links

PDB	RCSB:8yfq, PDBe:8yfq, PDBj:8yfq
PDBsum	8yfq
PubMed	39245712
UniProt	C4R4Y0

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