Structure of PDB 8wor Chain A Binding Site BS06

Receptor Information
>8wor Chain A (length=647) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PRRDPFDAARGADFDHVYSGVVNLSTENIYSFNYTSQPDQVTAVRVYVNS
SSENLNYPVLVVVRQQKEVLSWQVPLLFQGLYQRSYNYQEVSRTLCPSEA
TNETGPLQQLIFVDVASMAPLGAQYKLLVTKLKHFQLRTNVAFHFTASPS
QPQYFLYKFPKDVDSVIIKVVSEMAYPCSVVSVQNIMCPVYDLDHNVEFN
GVYQSMTKKAAITLQKKDFPGEQFFVVFVIKPEDYACGGSFFIQEKENNL
QRKKNLEVTIVPSIKESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQR
KKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHP
LGVLSAFNNILSNLGHVLLGFLFLLIVLRRDILHRRALEPKHFGLFYAMG
IALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINA
SAYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYY
MYMDRMVLLVVGNLVNWSFALFGLIYRPRDFASYMLGIFICNLLLYLAFY
IIMKLRSSEKVLPVPLFCIVATAVMWAAALYFFFQNLSSWEGTPAESREK
NRECILLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIP
Ligand information
Ligand IDSPL
InChIInChI=1S/C26H51NO3/c1-3-5-7-9-10-11-12-13-14-15-16-18-19-21-25(29)24(23-28)27-26(30)22-20-17-8-6-4-2/h19,21,24-25,28-29H,3-18,20,22-23H2,1-2H3,(H,27,30)/t24?,25-/m1/s1
InChIKeyAPDLCSPGWPLYEQ-WUBHUQEYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341CCCCCCCCCCCCCC=C[CH](O)[CH](CO)NC(=O)CCCCCCC
CACTVS 3.341CCCCCCCCCCCCC/C=C/[C@@H](O)[C@H](CO)NC(=O)CCCCCCC
ACDLabs 10.04O=C(NC(CO)C(O)/C=C/CCCCCCCCCCCCC)CCCCCCC
OpenEye OEToolkits 1.5.0CCCCCCCCCCCCCC=CC(C(CO)NC(=O)CCCCCCC)O
OpenEye OEToolkits 1.5.0CCCCCCCCCCCCCC=C[C@H](C(CO)NC(=O)CCCCCCC)O
FormulaC26 H51 N O3
NameOCTANOIC ACID (2-HYDROXY-1-HYDROXYMETHYL-HEPTADEC-3-ENYL)-AMIDE;
CERAMIDE
ChEMBL
DrugBank
ZINC
PDB chain8wor Chain A Residue 912 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8wor Structural insights into cholesterol transport and hydrolase activity of a putative human RNA transport protein SIDT1.
Resolution2.66 Å
Binding residue
(original residue number in PDB)
E555 W759 L807
Binding residue
(residue number reindexed from 1)
E406 W576 L624
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:8wor, PDBe:8wor, PDBj:8wor
PDBsum8wor
PubMed38378654
UniProtQ9NXL6|SIDT1_HUMAN SID1 transmembrane family member 1 (Gene Name=SIDT1)

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