Structure of PDB 8q8i Chain A Binding Site BS06

Receptor Information
>8q8i Chain A (length=279) Species: 10506 (Paramecium bursaria Chlorella virus 1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAMKLAELTLESDDFITSDKLFNFCKSTGAKYVKTDFIKFRQYQYIVSNC
GWRDDTDVVFLENTPVLVTGHSDYDISEREIDIIRLPNIRAWFCQNRNIP
HPKVISFPLGITNKDEPNSEIHRIIGNTDRILEVSKTPKEIKNLVYMNIT
VKNFPEERQRIVDLYSDKSWVTIGKGEVSEEGHRKFLEDMYAHKFCFAPR
GNGIDTHRLWESLYLRTIPIVKKHIAMEQFTDLPILFVNDWENITEEYLN
EQYDIIMAKDWNLDKLKIDYWYQKILEYS
Ligand information
Ligand IDO5R
InChIInChI=1S/C26H48O14/c1-4-5-6-7-8-9-10-35-26-23(40-25-21(34)19(32)17(30)14(11-27)38-25)22(16(29)13(3)37-26)39-24-20(33)18(31)15(28)12(2)36-24/h12-34H,4-11H2,1-3H3/t12-,13+,14-,15-,16-,17+,18+,19+,20+,21-,22-,23+,24-,25-,26-/m1/s1
InChIKeyOIDIMGBVRRENOK-VJYSWUEHSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCCCCCCCO[C@@H]1O[C@@H](C)[C@@H](O)[C@@H](O[C@H]2O[C@H](C)[C@@H](O)[C@H](O)[C@@H]2O)[C@@H]1O[C@H]3O[C@H](CO)[C@H](O)[C@H](O)[C@H]3O
OpenEye OEToolkits 2.0.7CCCCCCCCOC1C(C(C(C(O1)C)O)OC2C(C(C(C(O2)C)O)O)O)OC3C(C(C(C(O3)CO)O)O)O
CACTVS 3.385CCCCCCCCO[CH]1O[CH](C)[CH](O)[CH](O[CH]2O[CH](C)[CH](O)[CH](O)[CH]2O)[CH]1O[CH]3O[CH](CO)[CH](O)[CH](O)[CH]3O
OpenEye OEToolkits 2.0.7CCCCCCCCO[C@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)C)O)O)O)O[C@@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O
FormulaC26 H48 O14
Name(2~{R},3~{S},4~{S},5~{S},6~{R})-2-[(2~{S},3~{R},4~{R},5~{S},6~{R})-5-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-methyl-6-octoxy-3-oxidanyl-oxan-4-yl]oxy-6-methyl-oxane-3,4,5-triol
ChEMBL
DrugBank
ZINC
PDB chain8q8i Chain A Residue 309 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8q8i AO75L in complex with a synthetic trisaccharide acceptor.
Resolution1.77 Å
Binding residue
(original residue number in PDB)
K34 D36 S72 D73 T112 H122 N202 H207
Binding residue
(residue number reindexed from 1)
K34 D36 S72 D73 T112 H122 N202 H207
Annotation score1
External links