Structure of PDB 7ne6 Chain A Binding Site BS06

Receptor Information

>7ne6 Chain A (length=418) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

SCRCEKDEGPFYTHLGAGPNVAAIREIMEERFGQKGKAIRIERVIYTGKE
GKSSQGCPIAKWVVRRSSSEEKLLCLVRERAGHTCEAAVIVILILVWEGI
PLSLADKLYSELTETLRKYGTLTNRRCALNEERTCACQGLDPETCGASFS
FGCSWSMYYNGCKFARSKIPRKFKLLGDDPKEEEKLESHLQNLSTLMAPT
YKKLAPDAYNNQIEYEHRAPECRLGLKEGRPFSGVTACLDFCAHAHRDLH
NMQNGSTLVCTLTREDNREFGGKPEDEQLHVLPLYKVSDVDEFGSVEAQE
EKKRSGAIQVLSSFRRKVRMLAEPVKTCRGSDEVWSDSEQSFLDPDIGGV
AVAPTHGSILIECAKRELHATTPLKNPNRNHPTRISLVFYQHKSMNEPKH
GLALWEAKMAEKAREKEE

Ligand information

Ligand ID

InChI

InChI=1S/Mn/q+2

InChIKey

WAEMQWOKJMHJLA-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mn+2]
CACTVS 3.341	[Mn++]

Formula

Name

MANGANESE (II) ION

PDB chain

7ne6 Chain A Residue 2007 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	7ne6 Pronounced sequence specificity of the TET enzyme catalytic domain guides its cellular function.
Resolution	2.3 Å
Binding residue (original residue number in PDB)	H1382 D1384 H1881
Binding residue (residue number reindexed from 1)	H246 D248 H369
Annotation score	1

Enzymatic activity

Enzyme Commision number

1.14.11.80: methylcytosine dioxygenase.

Gene Ontology

	Molecular Function
GO:0070579	5-methylcytosine dioxygenase activity

	Biological Process
GO:0141166	chromosomal 5-methylcytosine DNA demethylation pathway

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Molecular Function

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Biological Process

External links

PDB	RCSB:7ne6, PDBe:7ne6, PDBj:7ne6
PDBsum	7ne6
PubMed	36070377
UniProt	Q6N021\|TET2_HUMAN Methylcytosine dioxygenase TET2 (Gene Name=TET2)

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