Structure of PDB 5w1d Chain A Binding Site BS06

Receptor Information

>5w1d Chain A (length=405) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

PSYQGYILESAPVGATISESLNLTTPLRIVALELHLFLNDYTSVFTVTPT
GITRYLTLLQPVDREEQQTYTFLITAFDGVQESEPVVVNIRVMDANDNTP
TFPEISYDVYVYTDMSPGDSVIQLTAVDADEGSNGEISYEILVGGKGDFV
INKTTGLVSIAPGVELIVGQTYALTVQASDNAPPAERRHSICTVYIEVLP
PNNQSPPRFPQLMYSLEVSEAMRIGAILLNLQATDREGDPITYAIENGDP
QRVFNLSETTGILSLGKALDRESTDRYILIVTASDGRPDGTSTATVNIVV
TDVNDNAPVFDPYLPRNLSVVEEEANAFVGQVRATDPDAGINGQVHYSLG
NFNNLFRITSNGSIYTAVKLNREARDHYELVVVATDGAVHPRHSTLTLYI
KVLDI

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

5w1d Chain A Residue 1007 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5w1d Structural determinants of protocadherin-15 mechanics and function in hearing and balance perception.
Resolution	3.35 Å
Binding residue (original residue number in PDB)	E385 D480
Binding residue (residue number reindexed from 1)	E9 D94
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0005509	calcium ion binding

	Biological Process
GO:0007155	cell adhesion
GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules

	Cellular Component
GO:0005886	plasma membrane
GO:0016020	membrane

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:5w1d, PDBe:5w1d, PDBj:5w1d
PDBsum	5w1d
PubMed	32963095
UniProt	Q99PJ1\|PCD15_MOUSE Protocadherin-15 (Gene Name=Pcdh15)

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