Structure of PDB 5vvm Chain A Binding Site BS06

Receptor Information

>5vvm Chain A (length=298) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

NPIQTVSVLESAEPGTVIANITAIDHDLNPKLEYHIVGIVAKDDTDRLVP
NQEDAFAVNINTGSVMVKSPMNRELVATYEVTLSVIDNASDLPESVSVPN
AKLTVNVLDVNDNTPQFKPFGITYYMERILEGATPGTTLIAVAAVDPDKG
LNGLVTYTLLDLVPPGYVQLEDSSAGKVIANRTVDYEEVHWLNFTVRASD
NGSPPRAAEIPVYLEIVDINDNNPIFDQPSYQEDVPVGTIILTVTATDAD
SGNFALIEYSLGDGAINPTTGDIYVLALAKDNPGDVASNRRENSVQVV

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

5vvm Chain A Residue 2506 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5vvm Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness.
Resolution	3.54 Å
Binding residue (original residue number in PDB)	N2373 N2375 D2405 D2407 F2411 D2456
Binding residue (residue number reindexed from 1)	N220 N222 D248 D250 F254 D281
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0005509	calcium ion binding

	Biological Process
GO:0007155	cell adhesion
GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules

	Cellular Component
GO:0005886	plasma membrane
GO:0016020	membrane

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Cellular Component

External links

PDB	RCSB:5vvm, PDBe:5vvm, PDBj:5vvm
PDBsum	5vvm
PubMed	30033219
UniProt	Q9H251\|CAD23_HUMAN Cadherin-23 (Gene Name=CDH23)

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