Structure of PDB 5nkw Chain A Binding Site BS06

Receptor Information
>5nkw Chain A (length=235) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HTLVWGVWVNGVDQGDGRNIYIRSPPNNNPVKNLTSPDMTCNVDNRVVPK
SVPVNAGDTLTFEWYHNTRDDDIIASSHHGPIAVYIAPAASNGQGNVWVK
LFEDAYNVTNSTWAVDRLITAHGQHSVVVPHVAPGDYLFRAEIIALHEAD
SLYSQNPIRGAQFYISCAQITINSSDDSTPLPAGVPFPGAYTDSTPGIQF
NIYTTPATSYVAPPPSVWSGALGGSIAQVGDASLE
Ligand information
Ligand IDCU
InChIInChI=1S/Cu/q+2
InChIKeyJPVYNHNXODAKFH-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Cu+2]
CACTVS 3.341[Cu++]
FormulaCu
NameCOPPER (II) ION
ChEMBL
DrugBankDB14552
ZINC
PDB chain5nkw Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5nkw Structural and electronic determinants of lytic polysaccharide monooxygenase reactivity on polysaccharide substrates.
Resolution1.48 Å
Binding residue
(original residue number in PDB)
H1 H78
Binding residue
(residue number reindexed from 1)
H1 H78
Annotation score3
Enzymatic activity
Enzyme Commision number 3.2.1.4: cellulase.
Gene Ontology
Molecular Function
GO:0004497 monooxygenase activity
GO:0046872 metal ion binding
Biological Process
GO:0030245 cellulose catabolic process
Cellular Component
GO:0005576 extracellular region

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:5nkw, PDBe:5nkw, PDBj:5nkw
PDBsum5nkw
PubMed29057953
UniProtA0A0S2GKZ1|LP9A_PANSI AA9 family lytic polysaccharide monooxygenase A (Gene Name=LPMO9A)

[Back to BioLiP]