Structure of PDB 3jbx Chain A Binding Site BS06

Receptor Information
>3jbx Chain A (length=550) Species: 7955 (Danio rerio) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRNAEKEL
LPGFHQFEWQPALKNVSTSWDVGIIDGLSGWTVSVDDVPADTISRRFRYD
VALVSALKDLEEDIMEGLRERALDDSMCTSGFTVVVKESCDGMGDVSEKH
GSGPAVPEKAVRFSFTIMSISIRLEGEDDGITIFQEQKPNSELSCRPLCL
MFVDESDHETLTAILGPVVAERKAMMESRLIISVGGLLRSFRFFFRGTGY
DEKMVREMEGLEASGSTYICTLCDSTRAEASQNMVLHSITRSHDENLERY
EIWRKNPFSESADELRDRVKGVSAKPFMETQPTLDALHCDIGNATEFYKI
FQDEIGEVYQKPNPSREERRRWRSTLDKQLRKKMKLKPVMRMNGNYARRL
MTREAVEAVCELVPSEERREALLKLMDLYLQMKPVWRSTCPSRDCPDQLC
QYSYNSQQFADLLSSMFKYRYDGKITNYLHKTLAHVPEIVERDGSIGAWA
SEGNESGNKLFRRFRKMNARQSKTFELEDILKHHWLYTSKYLQKFMEAHK
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3jbx Molecular Mechanism of V(D)J Recombination from Synaptic RAG1-RAG2 Complex Structures.
Resolution3.4 Å
Binding residue
(original residue number in PDB)		D730 E731 K732 S743 G744 R756 R845 R870 K953 T955 N956 Y957
Binding residue
(residue number reindexed from 1)		D251 E252 K253 S264 G265 R277 R366 R391 K474 T476 N477 Y478
Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
3.1.-.-
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0043565 sequence-specific DNA binding
GO:0046872 metal ion binding
GO:0061630 ubiquitin protein ligase activity
Biological Process
GO:0033151 V(D)J recombination

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Molecular Function
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Biological Process
External links
PDB RCSB:3jbx, PDBe:3jbx, PDBj:3jbx
PDBsum3jbx
PubMed26548953
UniProtO13033|RAG1_DANRE V(D)J recombination-activating protein 1 (Gene Name=rag1)

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