Structure of PDB 3f15 Chain A Binding Site BS06

Receptor Information
>3f15 Chain A (length=158) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GPVWRKHYITYRINNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTG
MADILVVFARGAHGDDHAFDGKGGILAHAFGPGSGIGGDAHFDEDEFWTT
HSGGTNLFLTAVHEIGHSLGLGHSSDPKAVMFPTYKYVDINTFRLSADDI
RGIQSLYG
Ligand information
Ligand IDHS1
InChIInChI=1S/C12H16N2O7S/c1-21-10-2-4-11(5-3-10)22(19,20)14(6-9(16)8-15)7-12(17)13-18/h2-5,9,15-16H,6-8H2,1H3/t9-/m0/s1
InChIKeyVGUSUBJRLNGCHT-VIFPVBQESA-N
SMILES
SoftwareSMILES
CACTVS 3.341COc1ccc(cc1)[S](=O)(=O)N(C[CH](O)CO)CC(=O)N=O
ACDLabs 10.04O=NC(=O)CN(S(=O)(=O)c1ccc(OC)cc1)CC(O)CO
OpenEye OEToolkits 1.5.0COc1ccc(cc1)S(=O)(=O)N(CC(CO)O)CC(=O)N=O
OpenEye OEToolkits 1.5.0COc1ccc(cc1)S(=O)(=O)[N@@](C[C@@H](CO)O)CC(=O)N=O
CACTVS 3.341COc1ccc(cc1)[S](=O)(=O)N(C[C@H](O)CO)CC(=O)N=O
FormulaC12 H16 N2 O7 S
Name2-[[(2S)-2,3-dihydroxypropyl]-(4-methoxyphenyl)sulfonyl-amino]-N-oxo-ethanamide;
(S)-N-(2,3-dihydroxypropyl)-4-methoxy-N-(2-nitroso-2-oxoethyl)benzenesulfonamide
ChEMBL
DrugBank
ZINCZINC000039715704
PDB chain3f15 Chain A Residue 0 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3f15 Exploring the subtleties of drug-receptor interactions: the case of matrix metalloproteinases.
Resolution1.7 Å
Binding residue
(original residue number in PDB)
I180 L181 A182 H218 E219 H222 H228 P238 Y240
Binding residue
(residue number reindexed from 1)
I75 L76 A77 H113 E114 H117 H123 P133 Y135
Annotation score1
Binding affinityMOAD: Kd=7.88nM
PDBbind-CN: -logKd/Ki=8.10,Kd=7.88nM
Enzymatic activity
Catalytic site (original residue number in PDB) H218 E219 H222 H228
Catalytic site (residue number reindexed from 1) H113 E114 H117 H123
Enzyme Commision number 3.4.24.65: macrophage elastase.
Gene Ontology
Molecular Function
GO:0004222 metalloendopeptidase activity
GO:0008237 metallopeptidase activity
GO:0008270 zinc ion binding
Biological Process
GO:0006508 proteolysis
Cellular Component
GO:0031012 extracellular matrix

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:3f15, PDBe:3f15, PDBj:3f15
PDBsum3f15
PubMed17269766
UniProtP39900|MMP12_HUMAN Macrophage metalloelastase (Gene Name=MMP12)

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