Structure of PDB 6tmf Chain d Binding Site BS05

Receptor Information

>6tmf Chain d (length=582) Species: 2287 (Saccharolobus solfataricus)

MRVAVINYDFCKPDKCNLECINFCPVDRSGGKAIELSEIVKGKPVIYEET
CIGCGICVKKCPYEAISIVNLPDELEGEVIHRYKVNGFKLFGLPTPKNNT
ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYN
YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELL
NMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDAPSSYLDVRERMN
MAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA
RVGINNFLKGYLPAENMKIRPDEIKFMLKTKMKWTKIIKKLGDFQLVVDN
GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQR
IFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSG
GELQKLYIAATLAKEADLYVLDAPSSYLDVEERYIVAKAIKRVTRERKAV
TFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEV
TFRRDAETGRPRVNKIGSYLDRVQKERGDYYS

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 6tmf Chain d Residue 604

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6tmf Molecular analysis of the ribosome recycling factor ABCE1 bound to the 30S post-splitting complex.
• Resolution: 2.8 Å
• Binding residue (original residue number in PDB): T113 Q167
• Binding residue (residue number reindexed from 1): T113 Q167
• Annotation score: 1

Gene Ontology

Molecular Function

• GO:0005506 iron ion binding
• GO:0005515 protein binding
• GO:0005524 ATP binding
• GO:0016491 oxidoreductase activity
• GO:0016887 ATP hydrolysis activity
• GO:0043024 ribosomal small subunit binding
• GO:0046872 metal ion binding

Biological Process

• GO:0006413 translational initiation
• GO:0006415 translational termination

External links

• PDB: RCSB:6tmf, PDBe:6tmf, PDBj:6tmf
• PDBsum: 6tmf
• PubMed: 32064661
• UniProt: Q980K5