Structure of PDB 9gd2 Chain W Binding Site BS05

Receptor Information

>9gd2 Chain W (length=641) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

GIDIVINHRLLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLD
NYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHVPERIIDS
QRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNREN
SKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSK
GDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDT
FEKWAPDLNCICYMGNQKSRDTIREYEFYTNPKTMKFNVLLTTYEYILKD
RAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNN
IKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRL
KKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGFSLLNIMN
ELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQL
LTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRIS
IDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMA
RAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAII

Ligand information

Ligand ID

BEF

InChI

InChI=1S/Be.3FH/h;3*1H/q+2;;;/p-3

InChIKey

OGIAHMCCNXDTIE-UHFFFAOYSA-K

SMILES

Software	SMILES
OpenEye OEToolkits 1.5.0	[Be-](F)(F)F
ACDLabs 10.04 CACTVS 3.341	F[Be-](F)F

Formula

Be F3

Name

BERYLLIUM TRIFLUORIDE ION

ChEMBL

DrugBank

ZINC

PDB chain

9gd2 Chain W Residue 1502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	9gd2 Resolution of transcription-induced hexasome-nucleosome complexes by Chd1 and FACT.
Resolution	4.2 Å
Binding residue (original residue number in PDB)	M403 G404 K407 R804 R807
Binding residue (residue number reindexed from 1)	M210 G211 K214 R601 R604
Annotation score	1

External links

PDB	RCSB:9gd2, PDBe:9gd2, PDBj:9gd2
PDBsum	9gd2
PubMed	39270644
UniProt	P32657\|CHD1_YEAST Chromo domain-containing protein 1 (Gene Name=CHD1)

[Back to BioLiP]