Structure of PDB 6et5 Chain W Binding Site BS05

Receptor Information
>6et5 Chain W (length=55) Species: 1079 (Blastochloris viridis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ADLKPSLTGLTEEEAKEFHGIFVTSTVLYLATAVIVHYLVWTARPWIAPI
PKGWV
Ligand information
Ligand IDNS0
InChIInChI=1S/C40H60/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-17,19,21-22,25-31,34H,13-14,18,20,23-24,32H2,1-10H3/b12-11+,25-15+,26-16+,31-17+,35-21+,36-22+,37-27+,38-28+,39-29+,40-30+
InChIKeyNHKJSVKSSGKUCH-XILUKMICSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC(C)CCC/C(C)=C/CC/C(C)=C/C=C/C(C)=C/C=C/C=C(C)/C=C/C=C(C)/C=C/C=C(\C)CCC=C(C)C
OpenEye OEToolkits 2.0.6CC(C)CCC/C(=C/CC/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C=C(\C)/CCC=C(C)C)/C)/C)/C
CACTVS 3.385CC(C)CCCC(C)=CCCC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCC=C(C)C
OpenEye OEToolkits 2.0.6CC(C)CCCC(=CCCC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCC=C(C)C)C)C)C
FormulaC40 H60
Nameall-trans-1,2-dihydroneurosporene
ChEMBL
DrugBank
ZINCZINC000058638795
PDB chain6et5 Chain W Residue 102 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6et5 Cryo-EM structure of the Blastochloris viridis LH1-RC complex at 2.9 angstrom.
Resolution2.87 Å
Binding residue
(original residue number in PDB)		I21 S25 T26
Binding residue
(residue number reindexed from 1)		I21 S25 T26
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Biological Process
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0016020 membrane
GO:0030077 plasma membrane light-harvesting complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6et5, PDBe:6et5, PDBj:6et5
PDBsum6et5
PubMed29618818
UniProtP04124|LHB_BLAVI Light-harvesting protein B-1015 beta chain (Gene Name=pufB)

[Back to BioLiP]