Structure of PDB 5j30 Chain QY Binding Site BS05

Receptor Information

>5j30 Chain QY (length=258) Species: 585035 (Escherichia coli S88) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

QQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARR
WRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQ
GRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA
IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEAST
RRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEP
IIQEHQAD

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

5j30 Chain RA Residue 4038 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5j30 Uniformity of Peptide Release Is Maintained by Methylation of Release Factors.
Resolution	3.2 Å
Binding residue (original residue number in PDB)	R116 E161
Binding residue (residue number reindexed from 1)	R23 E68
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003747	translation release factor activity
GO:0005515	protein binding
GO:0016149	translation release factor activity, codon specific
GO:0043022	ribosome binding

	Biological Process
GO:0006412	translation
GO:0006415	translational termination

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol

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Molecular Function

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Cellular Component

External links

PDB	RCSB:5j30, PDBe:5j30, PDBj:5j30
PDBsum	5j30
PubMed	27681416
UniProt	P0A7I0\|RF1_ECOLI Peptide chain release factor RF1 (Gene Name=prfA)

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