Structure of PDB 6zj3 Chain Li Binding Site BS05

Receptor Information

>6zj3 Chain Li (length=155) Species: 3039 (Euglena gracilis)

KAKYSYTPKAEAKCAKARGTDLRVHFKNTRETVKTLHGMTVKKAFAYLRD
VLARKRCIPFRRYGTGCGRTPQAKEFKHTRGRWPVKSVEYVQNLLKNAVA
NANTKGLDPNAMFISHIQANRAQQQRRRTYRAHGRINPYMSNPCHLEVVL
VTKEE

Ligand information

>6zj3 Chain LH (length=559)

aaguggcagucacugguuccaaugaacagccugaaggauuccccuugugu
ccguacugcaucaccgcagccggucuccucgacuagacgucgcuugucca
cggacgaaaugcagcuaagggaagucggcaaacuggccgugcaccuuugg
aagauacgguggcuccagaggccauggcucguguggaacuguugcugugc
aggggaaucugacuguuuaauugaaacccagcuuugugaagggaccagcu
ggcugguuccgugaggugacuucugcccagugcucugauugucaaugcga
agagauucagccaagcgcggguaaacggcgggaguaacuaugacucucuu
aagguagccaaaugccucgucaaccaauuauugacgcgcaugaauggauc
aacgagauuccugcugucccuagucgcugucuggugaaccaacaaccaag
ggaacgggcuuggaugugucagcggggaaagaagacccuguugaguuuga
cucuaguuugauacugugcaacaacauguggggcguagcauaggugggag
gugagugcc

..................................................
.............<<......>>......<<<<.....>>>>........
<<<<......<<.<<<<.<<.........<.....<<<<<<.........
....>>>>>><<.<<<<..<<<<..>>>>....>>>>.>>..........
..<<<<<<<<<...<<.........>>...<<<<<<<....<<.<.....
>.>>......>>>>>>>...<<..<<<..<<<<<<....<<<....<<<<
<....>>>.>>...>>>.>>>>..>>>>><<<<<<.......>>>>>>..
......<...........<<<<<.......>>>>>.....>.....>>..
..>>.>>>>>>>..>..>>.>>>>.>>..>>>>............<<<<<
........>>>>>.....................................
..................................................
.........

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6zj3 Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.
• Resolution: 3.15 Å
• Binding residue (original residue number in PDB): H27 T67 G68 G70 R71 R82 R84 W85 V87 K88 Y132 R133 G136 I138 N139 P140 Y141 M142 S143
• Binding residue (residue number reindexed from 1): H25 T65 G66 G68 R69 R80 R82 W83 V85 K86 Y130 R131 G134 I136 N137 P138 Y139 M140 S141

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Feb 28 23:03:12 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zj3', asym_id = 'Li', bs = 'BS05', title = 'Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zj3', asym_id='Li', bs='BS05', title='Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412,0015934', uniprot = '', pdbid = '6zj3', asym_id = 'Li'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412,0015934', uniprot='', pdbid='6zj3', asym_id='Li')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>