Structure of PDB 6zj3 Chain LR Binding Site BS05

Receptor Information

>6zj3 Chain LR (length=365) Species: 3039 (Euglena gracilis)

ARPLVTVQKEGKTVPLPKVFSSALRYDVVRFVHTNIAKNTRIPYAVSRRA
GHKHSAESWGTGRAVARIPRISGGGTHRSGQGAFGNMCRGGRMFAPTKVF
RKWHAKVPRKVRRLAVRAALAASAIPALVMARGHNLEDVPEIPLVVPNSV
EALEKTKDAVKLLKDIGAYHDVEKVAATKKVRVGKGKRRNRRYCVRKGPL
VVLSKRCEAQRAFRNLPGVDINFVSALNLLRLAPGGHIGRLIVFTEDAFN
QLDKVLKVDTIEGLPDSKRVINSEEVQGVIRHKIKASRRKPQKNSSRPRL
NPAHKVETKVQKKLYIERCKVNADPELRKAKEKKQKAAKKLWLLKVTGKV
DKKGNPRKSTKTPKQ

Ligand information

>6zj3 Chain LF (length=456)

uugaacaauggauccuacguggaccaugacugguaagcagugcuggugau
gcggggugcuccgagagcagacuuacagaucccgagugcuggcucauacu
cagaucccacaaaggauguugcuuacuagugcgcagcuccgaaaauggau
ggugcccaagucagugugucucccuuacagucugccaucgauguggcagc
caaggcagagcaucguuguguagaaagggcauggacaacagcugaucgug
uugggauugaucccggcuugaggcguugcccagagcagaucuugguugua
guagcgaguacuccaccuggagaggaguggcaacacaaccccgcugugug
cgguugaggacuggaguggagcagguuuccacaccaaacagccguugaau
gugggucaaccgaccgugagccaagugguaaguucaccgaacaaccaaag
cugccu

......................<<<<..<<<<.....>>>>..>>>>...
.<<<......>>>...<<<<<<<...<<..((.....<<<<<<.......
..<..........<<<.<<<<<.<<<..>>>.>>>>>>>>..........
))..>....>>>>>>........>>...>>>>>>><<.<<<<<<......
.........>>>>>>.>>.............<<<.<<<<.<<.......<
<<<<<<....>>>>>>>.....>>>>>>.>>>..................
..........<<<.<<<.........<<<<..........>>>>......
.>>>.>>>....................<<<<<.....<<.....>>..>
>>>>....................<<<.......>>>.............
......

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6zj3 Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.
• Resolution: 3.15 Å
• Binding residue (original residue number in PDB): T36 K40 R43 Y46 V67 A68 R69 Q83 M89 R91 M95 R103 R134 K176 A179 T180 K182 R184 V185 G186 K187 K189 R193 R198 K199 P236 G237 H239 N274 Q279 R283 K285 I286 K287 S289 R291 P293 Q294
• Binding residue (residue number reindexed from 1): T34 K38 R41 Y44 V65 A66 R67 Q81 M87 R89 M93 R101 R132 K174 A177 T178 K180 R182 V183 G184 K185 K187 R191 R196 K197 P234 G235 H237 N272 Q277 R281 K283 I284 K285 S287 R289 P291 Q292

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sun Apr 6 22:33:22 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zj3', asym_id = 'LR', bs = 'BS05', title = 'Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zj3', asym_id='LR', bs='BS05', title='Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '6zj3', asym_id = 'LR'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='6zj3', asym_id='LR')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>