Structure of PDB 6fi8 Chain G Binding Site BS05

Receptor Information
>6fi8 Chain G (length=128) Species: 210 (Helicobacter pylori) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LYKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEI
IEMQTDKDHIHILADIDPSFGVMKFIKTAKGRSSRILRQEFNHLKTKLPT
LWTNSCFISTVGGAPLNVVKQYIENQQN
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain6fi8 Chain G Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6fi8 Targeting IS608 transposon integration to highly specific sequences by structure-based transposon engineering.
Resolution2.598 Å
Binding residue
(original residue number in PDB)
K125 I128
Binding residue
(residue number reindexed from 1)
K120 I123
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004803 transposase activity
GO:0046872 metal ion binding
Biological Process
GO:0006313 DNA transposition

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:6fi8, PDBe:6fi8, PDBj:6fi8
PDBsum6fi8
PubMed29635476
UniProtQ933Z0

[Back to BioLiP]