Structure of PDB 6b40 Chain E Binding Site BS05

Receptor Information
>6b40 Chain E (length=553) Species: 7741 (Branchiostoma belcheri) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SCMTPEECLGMRLDMLMTKNQYSKEYNILKERGFSTLCPPKQLDAIEKTL
MPGTARYSLEPDSVTMDFHEYVPDFPCPNTKGVRFPYAHAVAKTLEELED
EIVNGLKKLGRDPNDPTLVIHTICKDGADGMGDVSVHKEKSDHLLPDKAL
RFSFCVLRCSVMHKDTEVTIYEDPNPNSVRSNRPVLECIGDENDDGTVAV
CVGPIECQRLLMKDKIMRVHMSDGTQRAHYLTFFNSMVDEKWDRAHGGLA
GAGSKYLCTLCEAVRDEALEKAGSYKITRTLKKIEVTASKMKYESQEKDT
FGVKGYPLLTTEPWERGIDATHTDINMGNYFKSLIVREMAQVHSWAKTAN
VKKQIVDAESKLDKHLKESLGLNPTLMMAGNYARELFKAEHADKLVALVD
KPDRKSALVEVLAKFRQLRKVYRANWPLNDMSDEVRQYKAKAVEMANDLK
THFPYAPCTNYLHKVIEHVQELIEHPSGVGSVGALSSEGNEAGNKLFRQL
RLGHARKGNTYNGLRDVLCTHWLYTSKTLRDKAAAAAAAAAAAAAAAAAA
AAA
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6b40 Transposon molecular domestication and the evolution of the RAG recombinase.
Resolution4.3 Å
Binding residue
(original residue number in PDB)		D811 E812 K813 A824 H894 A918 K919 M949 T1031 N1032
Binding residue
(residue number reindexed from 1)		D239 E240 K241 A252 H322 A346 K347 M377 T459 N460
Enzymatic activity
Enzyme Commision number 2.3.2.27: RING-type E3 ubiquitin transferase.
3.1.-.-
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0043565 sequence-specific DNA binding
GO:0061630 ubiquitin protein ligase activity
Biological Process
GO:0033151 V(D)J recombination

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Molecular Function
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Biological Process
External links
PDB RCSB:6b40, PDBe:6b40, PDBj:6b40
PDBsum6b40
PubMed30971819
UniProtA0A185KID9

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