Structure of PDB 7ody Chain D Binding Site BS05

Receptor Information
>7ody Chain D (length=92) Species: 260586 (Cyanophage S-2L) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PATVAELQAEIAAWIHPLNPDRRPGGTIAKLLEEIGELIASDPLEVADVL
ILALDLATLLGVDVTEAIRAKLAINRARSWARADNGAMRHIP
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain7ody Chain D Residue 204 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7ody Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA.
Resolution1.43 Å
Binding residue
(original residue number in PDB)		E38 E50
Binding residue
(residue number reindexed from 1)		E37 E45
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.1.9: nucleotide diphosphatase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:7ody, PDBe:7ody, PDBj:7ody
PDBsum7ody
PubMed34354070
UniProtA0A7U3TBV3|DGTPH_BPS2L dATP/dGTP diphosphohydrolase (Gene Name=S2L_23)

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