Structure of PDB 6j9f Chain D Binding Site BS05

Receptor Information
>6j9f Chain D (length=1215) Species: 360094 (Xanthomonas oryzae pv. oryzae PXO99A) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFK
PERDGLFCAAIFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRE
RMGHIDLASPVAHIWFLKSLPSRIGLMLDMTLRDIERVLYFEAYVVTRRQ
LLTEEQYLTARQEYNDDFDAAMGAEAVYELLRTIDLQSEMTRLREEIAST
GSETKLKRLTKRIKLIEAFLESGNRPEWMVMTVLPVLPPDLRPLVPLDGG
RFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQESVDALLD
NGRRGRAIKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLK
LHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDIL
EEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFD
GDQMAVHVPLSLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYY
MSRALENKKGEGMVFANTSEVKRAYDNRVVELHAKVKVRITQVDVDKRTS
GTSIVDTTVGRALLSEILPEGLPFQLANTEMTKKNISRLINSSYRLLGLK
DTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEAEVLEIQ
EQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETID
QKSMNSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFRE
GLNVQEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDVVITEIDCG
TTEGLIMTPIVEGGDVVEPLKERVLGRVVAEDVVTRNTLLDEAWVAKLED
ASVQSVKVRSTISCESSFGVCARCYGRDLARGHQVNIGEAVGVIAAQSIG
EPGTQLTDNITVKTTGSVKFNNLKSVAHASGSLVAVSRSGELSVLDGHGR
ERERYKLPYGATITAKDGDAVKAGQSVANWDPGLPRVADLFEARKPKDPA
ILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVT
KGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEV
ITRQMLRKVEIVDQGNSKFLNGEQVERQRVIEENARLVKRNELPAKYDPV
LLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGR
LIPAGTGLAYHAGRR
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6j9f Chain D Residue 1502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6j9f Structural basis for transcription antitermination at bacterial intrinsic terminator.
Resolution3.95 Å
Binding residue
(original residue number in PDB)		C85 C88
Binding residue
(residue number reindexed from 1)		C85 C88
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6j9f, PDBe:6j9f, PDBj:6j9f
PDBsum6j9f
PubMed31296855
UniProtB2SQQ2|RPOC_XANOP DNA-directed RNA polymerase subunit beta' (Gene Name=rpoC)

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