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Structure of PDB 1qo8 Chain D Binding Site BS05

Receptor Information

>1qo8 Chain D (length=564) Species: 56812 (Shewanella frigidimarina)

TPDMGSFHADMGSCQSCHAKPIKVTDSETHENAQCKSCHGEYAELANDKL
QFDPHNSHLGDINCTSCHKGHEEPKFYCNECHSFDIKPMPFSDAKKKKSW
DDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVD
KAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI
KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPE
IIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA
KSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASM
TDIDWVQAHPTVGKDSRILISETVRGVGAVMVNKDGNRFISELTTRDKAS
DAILKQPGQFAWIIFDNQLYKKAKMVRGYDHLEMLYKGDTVEQLAKSTGM
KVADLAKTVSDYNGYVASGKDTAFGRADMPLNMTQSPYYAVKVAPGIHHT
MGGVAINTTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVF
GRIAGDNAAKHALD

IndexError

Python 3.6.8: /usr/bin/python3 Fri Nov 22 11:23:35 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '1qo8', asym_id = 'D', bs = 'BS05', title = 'Open Conformation of a Flavocytochrome C3 Fumarate Reductase.'

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='1qo8', asym_id='D', bs='BS05', title='Open Conformation of a Flavocytochrome C3 Fumarate Reductase.')

    925                 p=subprocess.Popen(cmd,shell=True,stdout=subprocess.PIPE)

    926                 stdout,stderr=p.communicate()

=>  927                 line     =stdout.decode().splitlines()[0]

    928                 items    =line.split('\t')

    929                 rhea     ='\n'.join(["RHEA:"+r for r in items[2].split(',')])

line = '1qo8\tD\tFAD\t1', stdout = b'', stdout.decode = <built-in method decode of bytes object>, ).splitlines undefined

IndexError: list index out of range
      args = ('list index out of range',)
      with_traceback = <built-in method with_traceback of IndexError object>