Structure of PDB 1p1r Chain C Binding Site BS05

Receptor Information
>1p1r Chain C (length=374) Species: 9796 (Equus caballus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDD
HVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKC
RVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYT
VVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGL
GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPI
QEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQN
LSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVL
PFEKINEGFDLLRSGESIRTILTF
Ligand information
Ligand IDNMH
InChIInChI=1S/C8H17NO/c1-3-4-5-6-8(2)9-7-10/h7-8H,3-6H2,1-2H3,(H,9,10)/t8-/m1/s1
InChIKeyGFVRKPKAQHTAQK-MRVPVSSYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341CCCCC[CH](C)NC=O
CACTVS 3.341
OpenEye OEToolkits 1.5.0		CCCCC[C@@H](C)NC=O
ACDLabs 10.04O=CNC(CCCCC)C
OpenEye OEToolkits 1.5.0CCCCCC(C)NC=O
FormulaC8 H17 N O
Name(R)-N-(1-METHYL-HEXYL)-FORMAMIDE
ChEMBL
DrugBank
ZINC
PDB chain1p1r Chain D Residue 378 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB1p1r Formamides mimic aldehydes and inhibit liver alcohol dehydrogenases and ethanol metabolism
Resolution1.57 Å
Binding residue
(original residue number in PDB)		M306 L309
Binding residue
(residue number reindexed from 1)		M306 L309
Annotation score1
Binding affinityMOAD: Ki=15uM
Enzymatic activity
Catalytic site (original residue number in PDB) C46 R47 S48 H51 H67 E68 C97 C100 C103 C111 D115 C174 T178 R369
Catalytic site (residue number reindexed from 1) C46 R47 S48 H51 H67 E68 C97 C100 C103 C111 D115 C174 T178 R369
Enzyme Commision number 1.1.1.1: alcohol dehydrogenase.
Gene Ontology
Molecular Function
GO:0004022 alcohol dehydrogenase (NAD+) activity
GO:0004745 all-trans-retinol dehydrogenase (NAD+) activity
GO:0008270 zinc ion binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
Biological Process
GO:0042572 retinol metabolic process
GO:0042573 retinoic acid metabolic process
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1p1r, PDBe:1p1r, PDBj:1p1r
PDBsum1p1r
PubMed12855684
UniProtP00327|ADH1E_HORSE Alcohol dehydrogenase E chain

[Back to BioLiP]