Structure of PDB 8sjd Chain B Binding Site BS05

Receptor Information
>8sjd Chain B (length=477) Species: 7370 (Musca domestica) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RELKTVSADCKKEAIEKCAQWVVRDCRPFSAVSGSGFIDMIKFFIKVGAE
YGEHVNVEELLPSPITLSRKVTSDAKEKKALISREIKSAVEKDGASATID
LWTDNYIKRNFLGVTLHYHENNELRDLILGLKSLDFERSTAENIYKKLKA
IFSQFNVEDLSSIKFVTDRGANVVKSLANNIRINCSSHLLSNVLENSFEE
TPELNMPILACKNIVKYFKKANLQHRLRSSLKSECPTRWNSTYTMLRSIL
DNWESVIQILSEAGETQRIVHINKSIIQTMVNILDGFERIFKELQTCSSP
SLCFVVPSILKVKEICSPDVGDVADIAKLKVNIIKNVRIIWEENLSIWHY
TAFFFYPPALHMQQEKVAQIKEFCLSKMEDLELIPVCPSDEFEFYRKEIV
ILSEDFKVMEWWNLNSKKYPKLSKLALSLLSIPASSAASERTFSLAGNII
TEKRNRIGQQTVDSLLFLNSFYKNFCK
Ligand information
>8sjd Chain F (length=46) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
agagaacttcaacaagccacaggcaaacgtaagccacatagataag
Receptor-Ligand Complex Structure
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PDB8sjd Zinc-finger BED domains drive the formation of the active Hermes transpososome by asymmetric DNA binding.
Resolution5.1 Å
Binding residue
(original residue number in PDB)		R107 K585 R586 I589 G590 T593
Binding residue
(residue number reindexed from 1)		R27 K453 R454 I457 G458 T461
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0046872 metal ion binding
GO:0046983 protein dimerization activity
Biological Process
GO:0006357 regulation of transcription by RNA polymerase II
Cellular Component
GO:0005634 nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8sjd, PDBe:8sjd, PDBj:8sjd
PDBsum8sjd
PubMed37491363
UniProtQ25438

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