Structure of PDB 8j0f Chain B Binding Site BS05
Receptor Information
>8j0f Chain B (length=270) Species:
3702
(Arabidopsis thaliana) [
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IDRSRAFAKDVKRIVVKVGTAVVTGKGGRLALGRLGAICEQLAELNSDGF
EVILVSSGAVGLGRQRLRYRQLVNSSFADLQKPQMELDGKACAGVGQSSL
MAYYETMFDQLDVTVAQMLVTDSSFRDKDFRKQLSETVKAMLRMRVIPVF
NENDAISTRWDNDSLAALLSLELKADLLILLSDVEGLYTGPPSDSTSKLI
HTFIKEKHQDEITFGERGGMTAKVKAAVNAAYGGVPVIITSGYAAENISK
VLRGLRVGTLFHQDAHLWAP
Ligand information
Ligand ID
MG
InChI
InChI=1S/Mg/q+2
InChIKey
JLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mg+2]
CACTVS 3.341
[Mg++]
Formula
Mg
Name
MAGNESIUM ION
ChEMBL
DrugBank
DB01378
ZINC
PDB chain
8j0f Chain B Residue 803 [
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Receptor-Ligand Complex Structure
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PDB
8j0f
GK tetramer with adjacent hooks at reaction state
Resolution
3.3 Å
Binding residue
(original residue number in PDB)
R236 G237 G238
Binding residue
(residue number reindexed from 1)
R217 G218 G219
Annotation score
1
Enzymatic activity
Enzyme Commision number
1.2.1.41
: glutamate-5-semialdehyde dehydrogenase.
2.7.2.11
: glutamate 5-kinase.
Gene Ontology
Molecular Function
GO:0003824
catalytic activity
GO:0004349
glutamate 5-kinase activity
GO:0004350
glutamate-5-semialdehyde dehydrogenase activity
GO:0005524
ATP binding
GO:0016301
kinase activity
GO:0016491
oxidoreductase activity
GO:0016620
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
Biological Process
GO:0006561
proline biosynthetic process
GO:0009084
glutamine family amino acid biosynthetic process
GO:0009555
pollen development
GO:0009793
embryo development ending in seed dormancy
GO:0016310
phosphorylation
GO:0055129
L-proline biosynthetic process
Cellular Component
GO:0005737
cytoplasm
GO:0009506
plasmodesma
GO:0009507
chloroplast
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:8j0f
,
PDBe:8j0f
,
PDBj:8j0f
PDBsum
8j0f
PubMed
38740943
UniProt
P54888
|P5CS2_ARATH Delta-1-pyrroline-5-carboxylate synthase B (Gene Name=P5CSB)
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