Structure of PDB 8ic7 Chain B Binding Site BS05

Receptor Information

>8ic7 Chain B (length=855) Species: 69365 (Microbacterium arabinogalactanolyticum)

SRRARRIPHTAESVAFPLGGIGTGNVSLGARGELRDWEFENLPDKGRLNP
RSFFAIHAAPQGGPSATRVLEARSSGRHDRDAGYGFDELAGLPRLDSAGL
HGEYPVVDIDFTDATLPVTVSLHAFTPLVPLDADASGIPAAVLRYRVVNP
GDAPVTVTVVGSMSHTAGRGAPGPDAPWGMRGTQSVRWRESDGIRGLDFD
IDLDHDDPGYGTMSLTTTDSSTTVKPQWVTSYWPDGARLFWNDLADDGLL
APEARLTLEDKPRGLFAERDADPDAPALTEEQMLAKLPRVRTGSLGIVHT
LAPGEERDFEFVLAWSFPNRRRGWHGHIIFDDALEDGAPDLRDELGPIVR
NHYAVRWPDAWAAAAQLHRDLPALEGATDAFVEELYGGSLDPVLADAVGA
NIAALRSTTCFVLESPTPELGDGPVFAAWEGSFDHGGSCEGTCTHVWSYA
QTAAWLFPGLERSARRAEYLLETDESGAQKFRGNRIFGAPRWFIGPAVDG
QLGTFLRLHREWRFCGDDEFLRELWPAAARTLDYAAREWDHDGDGLLDGE
MHNTYDIEFHGVEPLSNIIHLAALRAGVRMAGHLGDTARAQEWALRADHV
AAAIEGVLWNGEYYRQVIDDVDAHRYQYGDGVLSDQLLGQFHAFLGGLGY
LLPEAHVRSALDAIVQHNHRGDLRDHESTQRVYALNDEGGLLLASWPEGG
RPALPFVYADEVWTGIEHQVAVSLLFAGRYDDALRIERTLRARYDGAHRS
PWNEIECGNHYARSLASWGLLIGASGAQWDAGARTLSFDPVLPGDARFLF
TTATGWGGVEIGDDVITLRLHGGALDLDELRLRGEVAGRGIHLDAGETRT
LTLTL

Ligand information

• Ligand ID: BXX
• InChI: InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5-/m1/s1
• InChIKey: HMFHBZSHGGEWLO-SQOUGZDYSA-N
• SMILES:
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(O1)O)O)O)O
  CACTVS 3.341: OC[CH]1O[CH](O)[CH](O)[CH]1O
  CACTVS 3.341: OC[C@H]1O[C@@H](O)[C@@H](O)[C@@H]1O
  OpenEye OEToolkits 1.5.0: C([C@@H]1[C@H]([C@@H]([C@@H](O1)O)O)O)O
  ACDLabs 10.04: OC1C(OC(O)C1O)CO
• Formula: C5 H10 O5
• Name: beta-D-arabinofuranose;
  beta-D-arabinose;
  D-arabinose;
  arabinose
• ZINC: ZINC000001530353
• PDB chain: 8ic7 Chain B Residue 914

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8ic7 Identification and characterization of endo-alpha-, exo-alpha-, and exo-beta-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria.
• Resolution: 1.35 Å
• Binding residue (original residue number in PDB): R671 D676 H677
• Binding residue (residue number reindexed from 1): R670 D675 H676
• Annotation score: 4

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 30 15:27:24 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1435     title=pdb2title(pdbid)

   1436     if bs.startswith("BS"):

=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1438     else:

   1439         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8ic7', asym_id = 'B', bs = 'BS05', title = 'Identification and characterization of endo-alph...abinomannan and arabinogalactan of mycobacteria. '

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8ic7', asym_id='B', bs='BS05', title='Identification and characterization of endo-alph...abinomannan and arabinogalactan of mycobacteria. ')

   1295         display_ec(ec,csaOrig,csaRenu)

   1296     if go:

=> 1297         display_go(go,uniprot,pdbid,asym_id)

   1298     return pubmed,uniprot

   1299 

global display_go = <function display_go>, go = '0004553,0005975', uniprot = '', pdbid = '8ic7', asym_id = 'B'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004553,0005975', uniprot='', pdbid='8ic7', asym_id='B')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>