Structure of PDB 7lvv Chain B Binding Site BS05

Receptor Information
>7lvv Chain B (length=1012) Species: 980427 (Deinococcus wulumuqiensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLQLVKKFQKRLEDIVAYGGTRNESSVRAAFQQLLSDWAEGSGLRLITEV
TQKAVAGNNVRPDGTLKDSLQQSRGYWESKDEADTLDDEIQKKLAKGYPR
DNIIFEDSRLAVLMQNGEEVQRVDMGDAGALAGLLKLFFEFEPPQVLEFR
KAVDHFKDEMPHLLKILREAADAAEQKADYRGERDHFVEIAKEAINPDFS
PRDAREMLIQHILTGDLFTSVFDNAQYHEDNNIAQQLQQLAATFYKGPVK
RDIAERTKRYYGAIQAAAAQIADHHEKQRFLKALYENFYRAYNPAGAERL
GIFYTPGEIVRFMIEATDTLLEKHFQKELADKGVEILDPATGTGTFITEL
IDFLPKAKLEQKYREELHCNELALLPYYIANLNIEATYAQKMGRYEEFRN
IVLVDTLDNTGGLFGSVTAENLERAKRQNARPVRVIIGNPPYRANQANEN
DNNKNREYKEIDRRIKATYVAASTAQKTKLYDMYSRFLRWATDRLKEDGI
VAFVSNSSFIDSRTFDGFRKEVVKDFDHIYILDMKGNANTSGERRKREGG
NVFNDQIKVGVAVYFLVRSDTKIWYHAVPDFWRAREKLEWLKTTKFEDIE
FDHIRPDAKHNWLGQVDEENDWNEFLPVADKDTKQAKGLGQERAIFKLYS
LGVVTNRDEWVYSRAEDELADKVRYFIGRYNEIIKLPLGDLMSRNWEGDI
KMTRATIADAQSRKSYSLEKNSIVPSLYRPFDVLKMYFSKNLNEMQYQMP
SIFPKGVGENVVIALSGSPAAKPFQVLATDILPSLDLLEKTQCLPFYRYT
MNGERLNNITDYALKAFQTHYADTSISREDIFHYVYAVLHHPAYREKYAL
NLRQEFPRIPFYPEFGRWAAWGRELMALHIGFESVAPYPLKRTDEPPKND
TPEALALAKKARLKVQRDAAKQPTGAVELDGLTTLAGIPAAAWAYKLGNR
SALEWVLERHKETTPKDATIREKFNTYRFADHKERVIDLLARVTTVSVET
VRIVGEMPAETM
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain7lvv Chain B Residue 1102 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7lvv Coordination of phage genome degradation versus host genome protection by a bifunctional restriction-modification enzyme visualized by CryoEM.
Resolution3.25 Å
Binding residue
(original residue number in PDB)		E25 D64 E79 S80
Binding residue
(residue number reindexed from 1)		E24 D63 E78 S79
Annotation score1
Enzymatic activity
Enzyme Commision number 2.1.1.72: site-specific DNA-methyltransferase (adenine-specific).
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003677 DNA binding
GO:0004519 endonuclease activity
GO:0008168 methyltransferase activity
GO:0008170 N-methyltransferase activity
GO:0009007 site-specific DNA-methyltransferase (adenine-specific) activity
Biological Process
GO:0009307 DNA restriction-modification system
GO:0032259 methylation

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7lvv, PDBe:7lvv, PDBj:7lvv
PDBsum7lvv
PubMed33826880
UniProtA0A345IJ72

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