Structure of PDB 7jm6 Chain B Binding Site BS05

Receptor Information
>7jm6 Chain B (length=667) Species: 9031 (Gallus gallus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LSLKYESLDYDNSENQLFLEEERRINHAAFRTVEIKRWVICAMIGILTGL
VACFIDIVVENLAGLKYRVVKDNIDKFTEKGGLSFSLLLWATLNASVVMV
GSVIVAFIEPVAAGSGIPQIKCYLNGVKIPHVVRLKTLVIKVCGVILSVV
GGLAVGKEGPMIHSGAVIAAGISQGRSTSLKRDFKIFEYFRRDTEKRDFV
SAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLN
SVLSVYHGNAWDLSSPGLINFGRFDSEKMGYTIQEIPIFIFMGVVGGILG
ALFNALNYWLTMFRIRYIHRPCLQVIEAMLVAAVTAAVGFVMIYCSRAFF
NTPEKSVVNLFHDPPGSYNPMTLGMFTLMYFFLACWTYGLTVSAGVFIPS
LLIGAAWGRLFGISLSYLSKGSIWADPGKYALMGAAAQLGGIVRMTLSLT
VIMMEATGNVTYGFPIMLVLMTAKIVGDYFVEGLYDMHIQLQSVPFLHWE
APVTSHSLTAREVMSTPVTCLRRIERVGTVVDILSDTSSNHNGFPVVESN
PNTTQVAGLRGLILRSQLIVLLKHKVFVERRLKLKDFRDAYPRFPPIQSI
HVSQDERECMIDLSEFMNPSPYTVPREASLPRVFKLFRALGLRHLVVVNN
HNEVVGMVTRKDLARYR
Ligand information
Ligand ID0J1
InChIInChI=1S/C27H52O16P2/c1-3-5-7-9-11-13-15-20(28)39-17-19(41-21(29)16-14-12-10-8-6-4-2)18-40-45(37,38)43-27-24(32)22(30)23(31)26(25(27)33)42-44(34,35)36/h19,22-27,30-33H,3-18H2,1-2H3,(H,37,38)(H2,34,35,36)/t19-,22+,23+,24-,25-,26-,27+/m1/s1
InChIKeyIELCLCXLJSIZNX-ZAIPYKEWSA-N
SMILES
SoftwareSMILES
ACDLabs 12.01CCCCCCCCC(OCC(OC(=O)CCCCCCCC)COP(=O)(O)OC1C(C(C(C(C1O)O)O)OP(O)(O)=O)O)=O
OpenEye OEToolkits 2.0.7CCCCCCCCC(=O)OCC(COP(=O)(O)OC1C(C(C(C(C1O)OP(=O)(O)O)O)O)O)OC(=O)CCCCCCCC
CACTVS 3.385CCCCCCCCC(=O)OC[CH](CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O)[CH](O[P](O)(O)=O)[CH]1O)OC(=O)CCCCCCCC
CACTVS 3.385CCCCCCCCC(=O)OC[C@H](CO[P](O)(=O)O[C@H]1[C@H](O)[C@@H](O)[C@H](O)[C@@H](O[P](O)(O)=O)[C@H]1O)OC(=O)CCCCCCCC
OpenEye OEToolkits 2.0.7CCCCCCCCC(=O)OC[C@H](COP(=O)(O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H]([C@H]1O)OP(=O)(O)O)O)O)O)OC(=O)CCCCCCCC
FormulaC27 H52 O16 P2
Name(2R)-3-{[(R)-hydroxy{[(1S,2R,3S,4S,5R,6R)-2,3,4,6-tetrahydroxy-5-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dinonanoate
ChEMBL
DrugBank
ZINC
PDB chain7jm6 Chain B Residue 906 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7jm6 Cryo-EM structure of the lysosomal chloride-proton exchanger CLC-7 in complex with OSTM1.
Resolution2.92 Å
Binding residue
(original residue number in PDB)
M127 V217 R218 L219 I252 A254 R260 S261 T262 S263 R713
Binding residue
(residue number reindexed from 1)
M43 V133 R134 L135 I168 A170 R176 S177 T178 S179 R593
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005247 voltage-gated chloride channel activity
Biological Process
GO:0006811 monoatomic ion transport
GO:0006821 chloride transport
GO:0055085 transmembrane transport
GO:1902476 chloride transmembrane transport
Cellular Component
GO:0016020 membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7jm6, PDBe:7jm6, PDBj:7jm6
PDBsum7jm6
PubMed32749217
UniProtQ5ZL60

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