Structure of PDB 7bbv Chain B Binding Site BS05

Receptor Information
>7bbv Chain B (length=298) Species: 498257 (Verticillium dahliae VdLs.17) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ASVTESCNIGYASTNGGTTGGKGGATTTVSTLAQFTKAAESSGKLNIVVK
GKISGGAKVRVQSDKTIIGQKGSELVGTGLYINKVKNVIVRNMKISKVKD
SNGDAIGIQASKNVWVDHCDLSSDLKSGKDYYDGLLDITHGSDWVTVSNT
FLHDHFKASLIGHTDSNAKEDKGKLHVTYANNYWYNVNSRNPSVRFGTVH
IYNNYYLEVGSSAVNTRMGAQVRVESTVFDKSTKNGIISVDSKEKGYATV
GDISWGSSTNTAPKGTLGSSNIPYSYNLYGKNNVKARVYGTAGQTLGF
Ligand information
Ligand IDMAN
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-PQMKYFCFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-mannopyranose;
alpha-D-mannose;
D-mannose;
mannose
ChEMBLCHEMBL365590
DrugBank
ZINCZINC000003860903
PDB chain7bbv Chain B Residue 407 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7bbv The specificity of pectate lyase VdPelB from Verticilium dahliae is highlighted by structural, dynamical and biochemical characterizations.
Resolution1.2 Å
Binding residue
(original residue number in PDB)		T22 T44
Binding residue
(residue number reindexed from 1)		T4 T26
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016829 lyase activity
GO:0030570 pectate lyase activity
GO:0046872 metal ion binding
Biological Process
GO:0000272 polysaccharide catabolic process
Cellular Component
GO:0005576 extracellular region

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7bbv, PDBe:7bbv, PDBj:7bbv
PDBsum7bbv
PubMed36639075
UniProtG2X3Y1

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