Structure of PDB 5th3 Chain B Binding Site BS05

Receptor Information
>5th3 Chain B (length=226) Species: 1292 (Staphylococcus warneri) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MNFKKYEENLVASIEEVIQRIIDDKHRPNIIGKTRVGAEVSDYLEDEFVK
YISSGKSSSLYDAQGAPKEKTKNPWDARCKFKFMDREEEIWIDFKAFKIT
NMDSNPDIGTPNKIVKFIHEGNFYLVFVLVYYESKQDGVEFVKYNNDYKK
VYLLKDVNESFRINPKPQMQVNIAAEPTYRTREEFIHFFVKKWKESFERQ
IKSLEKKEIMLKDLEDKLKNSNDNSI
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5th3 Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5th3 DNA recognition by the SwaI restriction endonuclease involves unusual distortion of an 8 base pair A:T-rich target.
Resolution2.33 Å
Binding residue
(original residue number in PDB)		D76 D93 F94
Binding residue
(residue number reindexed from 1)		D76 D93 F94
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:5th3, PDBe:5th3, PDBj:5th3
PDBsum5th3
PubMed28180307
UniProtA0A1S4NYF7

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