Structure of PDB 5o59 Chain B Binding Site BS05

Receptor Information

>5o59 Chain B (length=430) Species: 452589 (Trichoderma atroviride IMI 206040)

QQVCTTQAETHPALSWSKCTSGGSCTTQAGKVVLDANWRWTHAYPSGNNC
YNGNTWDATLCPDDATCAKNCCLEGADYSGTYGVTTSGNQLTIDFVTQSA
NKNVGARLYLMASDTAYEEFTLLNNEFSFDVDVSALPCGLNGALYFVSMD
ADGGASKYPTNLAGAKYGTGYCDSQCPRDLKFISGQANVEGWQPSSNNAN
TGIGGHGSCCSEMDIWEANSISQALTPHPCETVGQVTCSGDDCGGTYSNN
RYGGTCDPDGCDWNPYRLGNHTFYGPGSGFTVDTTKKITVVTQFSSTGIN
RYYVQNGVKFVQPNASGLSGYTGNTINSAYCSAEQTAFGGTSFTDKGGLT
QMNKALSGGMVLVLSLWDDYAANMLWLDSTYPTNDTASTPGAARGTCSTS
SGVPATVEQQSPNSKVVFSNIKFGPIGSTG

Ligand information

• Ligand ID: GLC
• InChI: InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6+/m1/s1
• InChIKey: WQZGKKKJIJFFOK-DVKNGEFBSA-N
• SMILES:
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(C(O1)O)O)O)O)O
  OpenEye OEToolkits 1.5.0: C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)O)O)O)O
  CACTVS 3.341: OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
  CACTVS 3.341: OC[C@H]1O[C@H](O)[C@H](O)[C@@H](O)[C@@H]1O
  ACDLabs 10.04: OC1C(O)C(OC(O)C1O)CO
• Formula: C6 H12 O6
• Name: alpha-D-glucopyranose;
  alpha-D-glucose;
  D-glucose;
  glucose
• ChEMBL: CHEMBL423707
• ZINC: ZINC000003861213
• PDB chain: 5o59 Chain B Residue 513

Receptor-Ligand Complex Structure

Structure summary

• PDB: 5o59 Correlation of structure, function and protein dynamics in GH7 cellobiohydrolases from Trichoderma atroviride, T. reesei and T. harzianum.
• Resolution: 1.75 Å
• Binding residue (original residue number in PDB): Y252 F338
• Binding residue (residue number reindexed from 1): Y252 F338
• Annotation score: 4

Enzymatic activity

• Enzyme Commision number: 3.2.1.-
  3.2.1.91: cellulose 1,4-beta-cellobiosidase (non-reducing end).

Gene Ontology

Molecular Function

• GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Biological Process

• GO:0005975 carbohydrate metabolic process

External links

• PDB: RCSB:5o59, PDBe:5o59, PDBj:5o59
• PDBsum: 5o59
• PubMed: 29344086
• UniProt: G9NTY1