Structure of PDB 3vth Chain B Binding Site BS05

Receptor Information
>3vth Chain B (length=630) Species: 273068 (Caldanaerobacter subterraneus subsp. tengcongensis MB4) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GFVPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYD
RAKTSMKVFPSREYHDPHDRRFHAQPVAEIKCVAKALKEGKIVAIKGIGG
FHLAVNALDDEAVATLRRRKKRYGKPFAVMMRDVEEVKKYCIVSPEEERL
LLSQRRPIVLLKKKGEKLAKGIADDLDTLGVMLPYAPIHYLLMEEIDFPI
VMTSGNVSEEPICKDNEEALEKLKDIADVFLLNNRDIVNRIDDSVTSFNA
GAERIIRRARGYAPQPILLKKEVKASILAVGGFYKNTFCMTKGHYAFISH
HIGDLDNEKAFNYYIEQIERYKKLFRVDPEVVAHDMHKGYLSTQYAKSLD
LPKIEVQHHHAHIASCMAEHNLDEKVIGIAYDGTGYGTDGNVWGAEILVC
DLKSFERIAHLKYKPLPGNELAIKKIYRTALGFIFDNISFYKNFVEQVDS
RELDIILKQIDRKINTAYVSSMGRFFDAVAALIGVRKEVLFEGQAAMELE
SLMAESEEYYEYEILKEDRYVIDPELILRQIYEDYMKGFEKSYISAKFHN
TVVNFTYDLANLIRKETGINKVVLSGGSFQNRYLLRRLIEKLSLSGFEVY
SNSKVPCNDGGISLGQAVIANKILEGSAWS
Ligand information
Ligand IDFE
InChIInChI=1S/Fe/q+3
InChIKeyVTLYFUHAOXGGBS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
CACTVS 3.341
OpenEye OEToolkits 1.5.0		[Fe+3]
FormulaFe
NameFE (III) ION
ChEMBL
DrugBankDB13949
ZINC
PDB chain3vth Chain B Residue 807 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3vth Structural basis for the reaction mechanism of S-carbamoylation of HypE by HypF in the maturation of [NiFe]-hydrogenases
Resolution2.0 Å
Binding residue
(original residue number in PDB)		H483 H487 D507 D734
Binding residue
(residue number reindexed from 1)		H358 H362 D382 D609
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.1.7: acylphosphatase.
6.2.-.-
Gene Ontology
Molecular Function
GO:0003725 double-stranded RNA binding
GO:0003998 acylphosphatase activity
GO:0008270 zinc ion binding
GO:0016743 carboxyl- or carbamoyltransferase activity
GO:0016787 hydrolase activity
GO:0016874 ligase activity
GO:0046872 metal ion binding
Biological Process
GO:0046944 protein carbamoylation
GO:0051604 protein maturation

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3vth, PDBe:3vth, PDBj:3vth
PDBsum3vth
PubMed22740694
UniProtQ8RDB0

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