Structure of PDB 1wra Chain B Binding Site BS05
Receptor Information
>1wra Chain B (length=308) Species:
171101
(Streptococcus pneumoniae R6) [
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ESSGNKIHFINVQEGGSDAIILESNGHFAMVDTGEDYDFPDGSDSRYPWR
EGIETSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTY
PVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSVIQNITQGD
AHFQFGDMDIQLYNYENETDSSGELKKIWDDNSNSLISVVKVNGKKIYLG
GDLDNVHGAEDKYGPLIGKVDLMKFNHHHDTNKSNTKDFIKNLSPSLIVQ
TSDSLPWKNGVDSEYVNWLKERGIERINAASKDYDATVFDIRKDGFVNIS
TSYKPIPS
Ligand information
Ligand ID
PC
InChI
InChI=1S/C5H14NO4P/c1-6(2,3)4-5-10-11(7,8)9/h4-5H2,1-3H3,(H-,7,8,9)/p+1
InChIKey
YHHSONZFOIEMCP-UHFFFAOYSA-O
SMILES
Software
SMILES
ACDLabs 10.04
O=P(O)(O)OCC[N+](C)(C)C
CACTVS 3.341
C[N+](C)(C)CCO[P](O)(O)=O
OpenEye OEToolkits 1.5.0
C[N+](C)(C)CCOP(=O)(O)O
Formula
C5 H15 N O4 P
Name
PHOSPHOCHOLINE
ChEMBL
CHEMBL1235161
DrugBank
DB03945
ZINC
ZINC000001532692
PDB chain
1wra Chain B Residue 501 [
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Receptor-Ligand Complex Structure
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PDB
1wra
Crystal structure of phosphorylcholine esterase domain of the virulence factor choline-binding protein e from streptococcus pneumoniae: new structural features among the metallo-beta-lactamase superfamily
Resolution
2.0 Å
Binding residue
(original residue number in PDB)
H112 D114 W148 N208 D228 H253 H254
Binding residue
(residue number reindexed from 1)
H86 D88 W122 N182 D202 H227 H228
Annotation score
5
Enzymatic activity
Enzyme Commision number
3.1.4.38
: glycerophosphocholine cholinephosphodiesterase.
External links
PDB
RCSB:1wra
,
PDBe:1wra
,
PDBj:1wra
PDBsum
1wra
PubMed
15908436
UniProt
Q8DQ62
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