Structure of PDB 9bcu Chain A Binding Site BS05

Receptor Information
>9bcu Chain A (length=900) Species: 311400 (Thermococcus kodakarensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKKVIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGV
IDPGLRCETCGARAGECPGHFGHIELARPVIHVGFAKTIHRVLESTCREC
GRIKLTDEEIEEYMQKFEVMGDRKGAVDKLIKEIHKKAKERMVCPHCGAP
QFPIKFERPTIYWELRKDEEGNEYKHRMMPSEVRDRLEKIPDKDLPLLGL
HPEKSRPEWMVLTVLPVPPVTMRPSITLESGIRAEDDLTHKLVDIIRINN
RLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKT
LAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPLAVAMEL
TVPEKVTEFNYEKLKQRVLNGPEKYPGANYVIDPEGRRIRLMESNRELIA
EKLDIGWTVERHLEDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLP
VCPPYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAG
IQDHISGGYLLTREGAYFTRYEVEQMLMFAGMDVNELPEPDKYENGEPLW
SGKTIFSLLLPDDLTIWYRNKLCDEPERCEALEKLIEEKLIPDPEEVRKL
AYDGFVYIQNGKLLSGAVDKKAYGREDGKLLDIIVREYGVERARQFLDQV
TKLTIWVITHKGFTTAIDDEDLPQEAIDRIHEIIREAEEKVQRLIEAYKR
GELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLGMNNHAVIMAKT
GARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARARGF
VTNSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLK
VDYDGTVRDPTGIIVQFKYGEDGVDPMKSWQGKTVDVDRVIVRTLLKMRG
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain9bcu Chain A Residue 1002 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB9bcu Structural basis of archaeal FttA-dependent transcription termination
Resolution2.2 Å
Binding residue
(original residue number in PDB)		C60 C63 H73
Binding residue
(residue number reindexed from 1)		C57 C60 H70
Annotation score1
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:9bcu, PDBe:9bcu, PDBj:9bcu
PDBsum9bcu
PubMed
UniProtQ5JE33

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