Structure of PDB 8uo8 Chain A Binding Site BS05

Receptor Information
>8uo8 Chain A (length=574) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DEEQLAHQYETIMDECGHGRFQWILFFVLGLALMADGVEVFVVSFALPSA
EKDMCLSSSKKGMLGMIVYLGMMAGAFILGGLADKLGRKRVLSMSLAVNA
SFASLSSFVQGYGAFLFCRLISGIGIGGALPIVFAYFSEFLSREKRGEHL
SWLGIFWMTGGLYASAMAWSIIPHYGWGFSMGTNYHFHSWRVFVIVCALP
CTVSMVALKFMPESPRFLLEMGKHDEAWMILKQVHDTNMRAKGTPEKVFT
VSNIKTPFKTIFKQVWDNALYCVMGPYRMNTLILAVVWFAMAFSYYGLTV
WFPDMIRYFQDEEYKSKMKVFFGEHVYGATINFTMENQIHQHGKLVNDKF
TRMYFKHVLFEDTFFDECYFEDVTSTDTYFKNCTIESTIFYNTDLYEHKF
INCRFINSTFLEQKEGCHMDLEQDNDFLIYLVSFLGSLSVLPGNIISALL
MDRIGRLKMIGGSMLISAVCCFFLFFGNSESAMIGWQCLFCGTSIAAWNA
LDVITVELYPTNQRATAFGILNGLCKFGAILGNTIFASFVGITKVVPILL
AAASLVGGGLIALRLPETREQVLM
Ligand information
Ligand ID43Y
InChIInChI=1S/C14H28NO8P/c1-6-13(16)20-10-12(23-14(17)7-2)11-22-24(18,19)21-9-8-15(3,4)5/h12H,6-11H2,1-5H3/p+1/t12-/m1/s1
InChIKeyLMBVWVMURYPSQM-GFCCVEGCSA-O
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CCC(=O)OCC(COP(=O)(O)OCC[N+](C)(C)C)OC(=O)CC
OpenEye OEToolkits 1.7.6CCC(=O)OC[C@H](COP(=O)(O)OCC[N+](C)(C)C)OC(=O)CC
CACTVS 3.385CCC(=O)OC[CH](CO[P](O)(=O)OCC[N+](C)(C)C)OC(=O)CC
CACTVS 3.385CCC(=O)OC[C@H](CO[P](O)(=O)OCC[N+](C)(C)C)OC(=O)CC
ACDLabs 12.01O=C(OCC(OC(=O)CC)COP(=O)(OCC[N+](C)(C)C)O)CC
FormulaC14 H29 N O8 P
Name[(2R)-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-2-propanoyloxy-propyl] propanoate;
1,2-dipropionyl-sn-glycero-3-phosphocholine
ChEMBL
DrugBank
ZINCZINC000013508374
PDB chain8uo8 Chain A Residue 708 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8uo8 Structure of synaptic vesicle protein 2B with padsevonil
Resolution3.2 Å
Binding residue
(original residue number in PDB)
M253 I257 Y271 S275 V278
Binding residue
(residue number reindexed from 1)
M167 I171 Y185 S189 V192
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005515 protein binding
Biological Process
GO:0006836 neurotransmitter transport
GO:0099509 regulation of presynaptic cytosolic calcium ion concentration
GO:2000300 regulation of synaptic vesicle exocytosis
Cellular Component
GO:0001669 acrosomal vesicle
GO:0005886 plasma membrane
GO:0008021 synaptic vesicle
GO:0016020 membrane
GO:0030672 synaptic vesicle membrane
GO:0031410 cytoplasmic vesicle
GO:0045202 synapse

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8uo8, PDBe:8uo8, PDBj:8uo8
PDBsum8uo8
PubMed38898101
UniProtQ7L1I2|SV2B_HUMAN Synaptic vesicle glycoprotein 2B (Gene Name=SV2B)

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