Structure of PDB 8u48 Chain A Binding Site BS05

Receptor Information
>8u48 Chain A (length=264) Species: 226186 (Bacteroides thetaiotaomicron VPI-5482) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TGIKNIVYIEVNDINPLNAGSYIMDDAPFFDYVILFAANIRGVGSDATLY
NNPNVQYILDHKDTLIKPLQDKGIKVLLGLLGDHTGLGFANMNSAQTEQF
ATAVANAVSQYGLDGVDFADAWAEYGRNGYPSGSTGSFSNLITALHNKMP
GKTITVFNYGYTSELTGVNSYIDYGIYAFFNSPSWSTGFGMPNSKFAPYT
INLNSAPSAASAQLYSGQVASKGYGAIGYYDLRANNIVSVLNGVAKGAFK
STCTYDGNSYPKNY
Ligand information
Ligand IDMAN
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-PQMKYFCFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-mannopyranose;
alpha-D-mannose;
D-mannose;
mannose
ChEMBLCHEMBL365590
DrugBank
ZINCZINC000003860903
PDB chain8u48 Chain D Residue 9 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8u48 Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate
Resolution1.9 Å
Binding residue
(original residue number in PDB)		N54 N94
Binding residue
(residue number reindexed from 1)		N12 N52
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:8u48, PDBe:8u48, PDBj:8u48
PDBsum8u48
PubMed38879612
UniProtQ8A889

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