Structure of PDB 8i4d Chain A Binding Site BS05

Receptor Information

>8i4d Chain A (length=419) Species: 5507 (Fusarium oxysporum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

LTVKSTKQWTIGTDVQGSERLNGVSYQEDALITYGDYQYVTFYETAPAGY
LNHFVKVGRRRVSPSVGDWEFLTLDDYTQKTMDGHNMISMGISGDGKIHL
SFDHHDVPINYRISKNGIAKDVPSKWTSDLFDPVVHELVGSQGPYSPLTY
PRFEPLGNGDLLLEFRIGQSGSGDSYIHRYSASTGKWQAYGMYIQGDDNN
AYINGLDYLDGKLYTSWTVRETPNADTNHGVYFAYSNDDGKTWFNTNDTK
LTKPISTSDDSTLIWDIPQNSRMVNQEGQLIDTKGRFHILMRDLLSGEHQ
YQHYLRKADGTWTKNAINPAGLNGPDLYDPRGKLAGDASGEYLFGILPDP
VKQSTGIYVATASKDFKDWKSLAEIPNTSTEPLFDKTRLHESGILSVFVR
QAGGFPDRKLQVWDFELDL

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

8i4d Chain A Residue 604 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8i4d Charge neutralization and beta-elimination cleavage mechanism of family 42 L-rhamnose-alpha-1,4-D-glucuronate lyase revealed using neutron crystallography
Resolution	1.06 Å
Binding residue (original residue number in PDB)	E28 E154 L206
Binding residue (residue number reindexed from 1)	E28 E154 L206
Annotation score	4

Enzymatic activity

Enzyme Commision number

4.2.2.-

Gene Ontology

	Molecular Function
GO:0046872	metal ion binding

View graph for
Molecular Function

External links

PDB	RCSB:8i4d, PDBe:8i4d, PDBj:8i4d
PDBsum	8i4d
PubMed	38382672
UniProt	A0A8J0PCK3

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