Structure of PDB 7oyh Chain A Binding Site BS05

Receptor Information

>7oyh Chain A (length=471) Species: 28049 (Acidothermus cellulolyticus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MHRVMGIETEYGISVPHQPNANAMAASSQVVNAYAARWDFEGLANVILTN
GARLYVDHAHPEYSTPEVTNPRDAVLWDKAGERIMAEAARRAADLPMGWT
IQLYKNNTDNKGASYGCHENYLMNRSTPFADIVRHLIPFFVTRQVFCGAG
RVGIGADGRGEGFQLSQRADFFEVEVGLETTLKRPIINTRDEPHADPEKY
RRLHVIIGDANMSEIATYLKLGTTALVLAMIEDGFLSQDFSVESPVGALR
AVSHDPTLRYQLRLHDGRRLTAVQLQMEYLEQARKYVEDRFGTDVDDMTR
DVLDRWETTLVRLADDPMQLSRDLDWVAKLSILEGYRQRENLPWSAHKLQ
LVDLQYHDVRPDRGLYNRLVARGRMNLLVDEAAVRTAMHEPPNDTRAYFR
GRCLAKFGAEIAAASWDSVIFDLPGRDSLQRVPTLEPLRGTRAHVGDLLD
RCRSATELVAALTGGENLYFQ

Ligand information

Ligand ID

MF4

InChI

InChI=1S/4FH.Mg/h4*1H;/q;;;;+2/p-4

InChIKey

XVYWAXYEHHUKQW-UHFFFAOYSA-J

SMILES

Software	SMILES
CACTVS 3.341	F[Mg--](F)(F)F
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	F[Mg-2](F)(F)F

Formula

F4 Mg

Name

TETRAFLUOROMAGNESATE(2-);
MAGNESIUMTETRAFLUORIDE

ChEMBL

DrugBank

ZINC

PDB chain

7oyh Chain A Residue 627 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	7oyh Structures of prokaryotic ubiquitin-like protein Pup in complex with depupylase Dop reveal the mechanism of catalytic phosphate formation.
Resolution	1.75 Å
Binding residue (original residue number in PDB)	R227 H241
Binding residue (residue number reindexed from 1)	R190 H204
Annotation score	1

Enzymatic activity

Enzyme Commision number

3.4.-.-

Gene Ontology

	Molecular Function
GO:0005524	ATP binding
GO:0008233	peptidase activity
GO:0016787	hydrolase activity
GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
GO:0046872	metal ion binding

	Biological Process
GO:0010498	proteasomal protein catabolic process
GO:0019941	modification-dependent protein catabolic process
GO:0070490	protein pupylation

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Molecular Function

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Biological Process

External links

PDB	RCSB:7oyh, PDBe:7oyh, PDBj:7oyh
PDBsum	7oyh
PubMed	34789727
UniProt	A0LU48\|DOP_ACIC1 Depupylase (Gene Name=dop)

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